CK938916

Overview
NameCK938916
Unique NameCK938916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F  +  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC +SG KIYPG G R+ R+D +V+ F N+KC+  F  +  P ++TWT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHKKGQQEEIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAV 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++                        R I GA+L++I++RR+ KPEVR A RE  L
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKL 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++                        R I GA+L++I++RR+ KPEVR A RE  L
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKL 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_ICTPU (60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G  + R D +VF F N+KC+  F  +  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3
Query:   63 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            FSG +IYPGKG  ++R DS++F F N K +  F  R  P ++ WT +Y                        R+IVGA+LEVI++RR+ +PE R AAR AA+
Sbjct:    8 FSGQRIYPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKAQRAIVGASLEVIKERRSMRPEARSAARLAAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +Y                      Y R+IVGA+L  I  +R  KPEVR A R+ A+
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQTKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +Y                      Y R+IVGA+L  I  +R  KPEVR A RE A+
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_YARLI (60S ribosomal protein L24 OS=Yarrowia lipolytica GN=RPL24 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYXXXXXXXXXXXXXPYS--------RSIVGATLEVIQKRRTEKPEVRDAAR 332
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    F  R  P ++ WT +Y                        R IVGA+L+VI+++R  +PE R+A R
Sbjct:    1 MKIELDSFSGNKIYPGRGTLFVRGDSKIFRFYSSKTASLFKQRKNPRRIAWTVLYRRKHKKGITEEVSKKRSRKSVKAVRGIVGASLDVIKEKRNARPETRNATR 105          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K  LC FSG KIYPG G   ++ D + F F + KC+R +  +  P K+TWT +Y                      + R+IVGA+L  I  +R  KPEVR A R+ A+
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAI 109          
The following BLAST results are available for this feature:
BLAST of CK938916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_GILMI3.259e-1539.4560S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
RL24_BRABE4.256e-1538.5360S ribosomal protein L24 OS=Branchiostoma belcher... [more]
RL24A_YEAST1.238e-1439.4560S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24B_YEAST1.617e-1439.4560S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_ICTPU2.758e-1438.5360S ribosomal protein L24 OS=Ictalurus punctatus G... [more]
RL24_NEUCR1.048e-1340.2060S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_SPOFR1.788e-1338.5360S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_PLUXY1.788e-1339.4560S ribosomal protein L24 OS=Plutella xylostella G... [more]
RL24_YARLI3.050e-1338.1060S ribosomal protein L24 OS=Yarrowia lipolytica G... [more]
RL24_DROME1.159e-1236.7060S ribosomal protein L24 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938916 ID=CK938916; Name=CK938916; organism=Citrus sinensis; type=EST; length=695bp
GGGGGAAGCCGCATCCAGCAACACCATCAGAAACCATGGTTCTCAAGACT
GAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGTATCAG
ATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCA
AGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGACAGCC
ATGTACAGGAAACAGCACAAGAAGAAGCGTCGTGCCACTAAGAAGCCCTA
TTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAGAAGAA
CTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTCGTGAA
ATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGGCAAAGAAAGC
GGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGTAGCGTGCCTA
AGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGGTGGAAAGCGG
TGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAACAATTAGAAC
TTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAGACCAGATTTT
TTTGTGGTTTTTGTTTATGGTTTTGCATTGGGAGTTAATTTGCCTTTTAC
TTAATTGAATCAAAGTTTTCTCAGAAAAAAAAAAAAAAAAAAAAA
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