CK938916

Overview
NameCK938916
Unique NameCK938916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K E+C +SG K+YPG G R IR D + F F N K +R  + +  P +++WT +Y                       +R I GA+L  I  +R +KPEVR A R+ A+
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQAI 109
The following BLAST results are available for this feature:
BLAST of CK938916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_SCHJA4.404e-1234.8660S ribosomal protein L24 OS=Schistosoma japonicum... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938916 ID=CK938916; Name=CK938916; organism=Citrus sinensis; type=EST; length=695bp
GGGGGAAGCCGCATCCAGCAACACCATCAGAAACCATGGTTCTCAAGACT
GAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGTATCAG
ATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCA
AGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGACAGCC
ATGTACAGGAAACAGCACAAGAAGAAGCGTCGTGCCACTAAGAAGCCCTA
TTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAGAAGAA
CTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTCGTGAA
ATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGGCAAAGAAAGC
GGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGTAGCGTGCCTA
AGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGGTGGAAAGCGG
TGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAACAATTAGAAC
TTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAGACCAGATTTT
TTTGTGGTTTTTGTTTATGGTTTTGCATTGGGAGTTAATTTGCCTTTTAC
TTAATTGAATCAAAGTTTTCTCAGAAAAAAAAAAAAAAAAAAAAA
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