CK938909

Overview
NameCK938909
Unique NameCK938909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.348e-29
Identity = 78/247 (31.58%), Postives = 131/247 (53.04%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 763
            +A  TPGFSG               R  + A+     + +I+R++ G+E  + +   + K +VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P  D  L+++QQL  R+   LGGR +EE+ F  P VT+GA+ D +++T +A  MVT  GMS+   W         D+          S++  + ID+ V R+    ++     ++   E ++KI +VLL+KE ++ ++   +L +
Sbjct:  548 LAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG-DIFLLTEQQLKDRMTMSLGGRVSEELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDDSDL------TKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGK 785          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.067e-29
Identity = 84/252 (33.33%), Postives = 126/252 (50.00%), Query Frame = 2
Query:    5 DADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 757
            D  V  ++IA  T GFSG                 GK  ++ KE++ S D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D     + QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E + +L
Sbjct:  468 DKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.067e-29
Identity = 79/244 (32.38%), Postives = 126/244 (51.64%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 757
            +A  TPGFSG               R    AI+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L   AY   ++ +   +  ++K+  +LLEKE +  ++   +L
Sbjct:  508 LASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL----EKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQLL 744          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.231e-29
Identity = 78/244 (31.97%), Postives = 128/244 (52.46%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 757
            +A  TPGFSG               R    +I+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L + AY+  ++ +   +  ++K+  +LLEKE +  ++   +L
Sbjct:  509 LASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL----EKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 745          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 77/244 (31.56%), Postives = 128/244 (52.46%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 757
            +A  TPGFSG               R    +I+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L + AY+  ++ +   +  ++K+  +LLEKE +  ++   +L
Sbjct:  510 LASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPREQ-YLYTREQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL----EKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 746          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.988e-28
Identity = 80/247 (32.39%), Postives = 126/247 (51.01%), Query Frame = 2
Query:    5 DADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETM 730
            D  +S D ++ +    TPGF+G               R    ++  +  + +I+R++ G+E  T +     K+ VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QLF R+   LGGR AE++ FG  ++TTGA  DL+++T  A   +  FGMSE       D  + G+     M     SE  A+ ID  V+ L   AY   L  +   RE ++K+   LLEKE +
Sbjct:  489 DGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLPREQ-FLYTREQLFDRMCMMLGGRVAEQLFFG--QITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQGET----MVEKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGRRLLEKEVL 728          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.596e-28
Identity = 83/246 (33.74%), Postives = 127/246 (51.63%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 757
            +A  TPGF+G               R     I+    + +I+R++AG+E  T +   + K  VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P D   LIS++Q   R++  LGGR +EE+ F  P VT+GA  D +++T +A  MVT+ GMS +IG  S      +  V          S K A  ID  VK + D A+      +  N + +D + + LL KE ++ ++   +L
Sbjct:  493 LATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFDQNDGNFKV------NKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMIRLL 729          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.784e-28
Identity = 81/248 (32.66%), Postives = 128/248 (51.61%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 763
            +A  TPGF+G               R     I+ +  + +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+D+  L++K+QLF      LGGRAAEEV+ G  +++TGA  DL+++T +    V  +G SE +G  S        ++          S + A  ID  V+    +AYE  +  I+ +++ + +I E+LLEKE +  D+   +L E
Sbjct:  520 LAALTPGFAGADIANVCNEAALIAARSEGTLITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--KISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDGFEM------SKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAELLLEKEVLHQDDLVQVLGE 758          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.865e-28
Identity = 73/251 (29.08%), Postives = 136/251 (54.18%), Query Frame = 2
Query:   11 DVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 757
            DV L +IA  T GF+G               +    A+S ++++ S DRI+ G E  +     ++K + AYHE GHA+    T       K T++PRG + G+T  +P  D    ++++  A +   +GGRAAEE+++G+ ++T+GA  D+ + T +A++MVT FGMS+ IGP SL                +++S      +++ +K L + +YE +LS ++++++ +D +   L++ E ++ +E   ++
Sbjct:  459 DVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL------------EAEMDNLSPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEEMNRVV 697          
BLAST of CK938909 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.865e-28
Identity = 83/247 (33.60%), Postives = 126/247 (51.01%), Query Frame = 2
Query:   29 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 763
            +A  TPGF+G               R  +  I+ +  + +IDRI+ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAEEV+ G   ++TGA  DL+++T +    V  +G SE     L+   Q  D           S + A  ID  V+    +AY+  +  I  ++E + KI E+LLEKE +  D+   +L E
Sbjct:  535 LAALTPGFAGADIANVCNEAALIAARSEETQITMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--RISTGAQNDLEKVTKMTYAQVAVYGFSE--KVGLLSFPQRDD---GFEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQVAKIAEMLLEKEVLHQDDLVRVLGE 773          
The following BLAST results are available for this feature:
BLAST of CK938909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RCA1_YEAST2.348e-2931.58Mitochondrial respiratory chain complexes assembly... [more]
YMEL1_RAT3.067e-2933.33ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
AFG32_MOUSE3.067e-2932.38AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN5.231e-2931.97AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG32_BOVIN1.522e-2831.56AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
AFG31_MOUSE1.988e-2832.39AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
AFG3_YEAST2.596e-2833.74Mitochondrial respiratory chain complexes assembly... [more]
FTSH3_ORYSJ5.784e-2832.66Cell division protease ftsH homolog 3, mitochondri... [more]
YME1_SCHPO9.865e-2829.08Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH8_ORYSJ9.865e-2833.60Cell division protease ftsH homolog 8, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_G01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938909 ID=CK938909; Name=CK938909; organism=Citrus sinensis; type=EST; length=817bp
GGGTGATGCAGATGTGTCTCTTGATGTGATAGCCATGAGAACACCTGGGT
TCAGTGGTGCTGACCTTGCAAACCTCTTAAATGAGGCTGCTATATTGGCT
GGACGACGCGGGAAAGCTGCTATTTCATCTAAAGAGATTGATGATTCGAT
TGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGAAGA
GTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGAACT
TTGACTCCAGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACGTGG
TCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCTTGA
TATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTAGA
GCTGCTGAGGAAGTGATTTTTGGAGAGCCTGAAGTGACAACAGGAGCAGC
TGGTGATTTGCAGCAGATCACTGGTTTGGCCAAACAGATGGTAACCACAT
TTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACAAAGT
GGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGAAGCT
TGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCCTATG
AGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAAGATC
GTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCCGGGC
AATCCTCTCAGAGTTTGTCGAAATCCTAGCTGAGAATAGGGTCCCTCCAG
CTGTTCCAGCACCATNN
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