CK938881

Overview
NameCK938881
Unique NameCK938881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_OLIPU (30S ribosomal protein S11, chloroplastic OS=Olimarabidopsis pumila GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_NASOF (30S ribosomal protein S11, chloroplastic OS=Nasturtium officinale GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_LOBMA (30S ribosomal protein S11, chloroplastic OS=Lobularia maritima GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_LEPVR (30S ribosomal protein S11, chloroplastic OS=Lepidium virginicum GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_DRANE (30S ribosomal protein S11, chloroplastic OS=Draba nemorosa GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_DAUCA (30S ribosomal protein S11, chloroplastic OS=Daucus carota GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 88/104 (84.62%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CRUWA (30S ribosomal protein S11, chloroplastic OS=Crucihimalaya wallichii GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CAPBU (30S ribosomal protein S11, chloroplastic OS=Capsella bursa-pastoris GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_BARVE (30S ribosomal protein S11, chloroplastic OS=Barbarea verna GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ARATH (30S ribosomal protein S11, chloroplastic OS=Arabidopsis thaliana GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.240e-42
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_OLIPU1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Olimar... [more]
RR11_NASOF1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Nastur... [more]
RR11_LOBMA1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Lobula... [more]
RR11_LEPVR1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Lepidi... [more]
RR11_DRANE1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Draba ... [more]
RR11_DAUCA1.240e-4284.6230S ribosomal protein S11, chloroplastic OS=Daucus... [more]
RR11_CRUWA1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Crucih... [more]
RR11_CAPBU1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Capsel... [more]
RR11_BARVE1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Barbar... [more]
RR11_ARATH1.240e-4285.5830S ribosomal protein S11, chloroplastic OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bp
GGGGGAATAACAATTATGAAAATAAGGGCTTCAGTTCGTAAAATTTGTGA
AAAATGTCGACTGATCCGCAGGAGGGGACGGATTATAGTAATTTGTTCCA
ACCCGAGACATAAACAAAGACAAGGATAATCTTTCGAAAAGTTTAGAAAG
TAACCGATGAACAAATCAACATAAAAGATCGGTTTTGACATGAAATGGAT
ATATCCATATATCTCTGACTTATATTTATGAAATGATCAAATATGGCAAA
ATCTCCACCACGAAGTGGTTCACGTAGGCCGGGACGGATCGGTTCACGTA
AAAGTGGACGTCGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTC
AACAACACCATTGTGACTGTTACAGATGTCCGGGGTCGGGTAATTTCTTG
GTCCTCGGCCGGTACTTGTGGATTCAGGGGTACAAGAAGAGGTACGCCTT
TTGCTGCTCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGCGGATCAA
GGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGA
TGCGGCATTACGAGCTATTCGTAGAAGCGGTATCCTTTTAAATTTCGTAC
GGGATGTAACCCCTATGCCACACAATGGTTGCAGACCCCCTAAAAAAAGA
CGGGTGTAGAAATAAACATTGAAGAGATTTCAAGAGAAATAAATGACTCA
ATGATCTGACAAATAATATTACTATGGTTCGAGAGAAAGTAAAAGTATCT
ACTCGGACACTACAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCG
TCTTTATTATGGGCGCTTTATTTTGTCTCCACTTATGAAAGGTCAAGCCG
ACACAATAGGCATTGCGATGCTGAGAGTTTTGCTTGNNNN
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