CK938881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PIPCE (30S ribosomal protein S11, chloroplastic OS=Piper cenocladum GN=rps11 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42 Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIHVQASFNNTIVTVTDVRGRV+SWSSA PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC Sbjct: 27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVRDVTPMPHNGC 130
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CHLSC (30S ribosomal protein S11, chloroplastic OS=Chloranthus spicatus GN=rps11 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42 Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIHVQASFNNTIVTVTDVRGRV+SWSSA PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC Sbjct: 27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVRDVTPMPHNGC 130
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ARAHI (30S ribosomal protein S11, chloroplastic OS=Arabis hirsuta GN=rps11 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42 Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KG+IHVQASFNNTIVTVTDVRGRVISWSSA PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC Sbjct: 27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_LACSA (30S ribosomal protein S11, chloroplastic OS=Lactuca sativa GN=rps11 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.114e-42 Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIH+QASFNNTIVTVTDVRGRV+SWSSA PFAAQTAAG+AIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC Sbjct: 25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTSGFRGTKRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 128
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_BUXMI (30S ribosomal protein S11, chloroplastic OS=Buxus microphylla GN=rps11 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.114e-42 Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIHVQASFNNTIVTVTDVRGRV+SWSSA PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC Sbjct: 27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVRDVTPMPHNGC 130
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_HELAN (30S ribosomal protein S11, chloroplastic OS=Helianthus annuus GN=rps11 PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.761e-42 Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIH+QASFNNTIVTVTDVRGRV+SWSSA PFAAQTAA NAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC Sbjct: 25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTCGFQGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 128
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_GUIAB (30S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica GN=rps11 PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.761e-42 Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIH+QASFNNTIVTVTDVRGRV+SWSSA PFAAQTAA NAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC Sbjct: 25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 128
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_AETGR (30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflora GN=rps11 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 3.606e-42 Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIHVQASFNNTIVTVTDVRGRVISWSSA PFAAQTAAGNAIRAV DQG+QRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC Sbjct: 27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGIQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_AETCO (30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium GN=rps11 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 3.606e-42 Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3 Query: 321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 KGVIHVQASFNNTIVTVTDVRGRVISWSSA PFAAQTAAGNAIRAV DQG+QRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC Sbjct: 27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGIQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_NYMAL (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba GN=rps11 PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.710e-42 Identity = 87/103 (84.47%), Postives = 89/103 (86.41%), Query Frame = 3 Query: 324 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632 GVIHVQASFNNTIVTVTD +GRV+SWSSA PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC Sbjct: 28 GVIHVQASFNNTIVTVTDPQGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130 The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bpback to top |