CK938881

Overview
NameCK938881
Unique NameCK938881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PIPCE (30S ribosomal protein S11, chloroplastic OS=Piper cenocladum GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CHLSC (30S ribosomal protein S11, chloroplastic OS=Chloranthus spicatus GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ARAHI (30S ribosomal protein S11, chloroplastic OS=Arabis hirsuta GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42
Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KG+IHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_LACSA (30S ribosomal protein S11, chloroplastic OS=Lactuca sativa GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.114e-42
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAG+AIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTSGFRGTKRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 128          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_BUXMI (30S ribosomal protein S11, chloroplastic OS=Buxus microphylla GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.114e-42
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_HELAN (30S ribosomal protein S11, chloroplastic OS=Helianthus annuus GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.761e-42
Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTCGFQGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 128          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_GUIAB (30S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.761e-42
Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   25 KGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 128          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_AETGR (30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflora GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.606e-42
Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQG+QRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGIQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_AETCO (30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.606e-42
Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQG+QRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGIQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_NYMAL (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.710e-42
Identity = 87/103 (84.47%), Postives = 89/103 (86.41%), Query Frame = 3
Query:  324 GVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            GVIHVQASFNNTIVTVTD +GRV+SWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   28 GVIHVQASFNNTIVTVTDPQGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130          
The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_PIPCE1.619e-4283.6530S ribosomal protein S11, chloroplastic OS=Piper ... [more]
RR11_CHLSC1.619e-4283.6530S ribosomal protein S11, chloroplastic OS=Chlora... [more]
RR11_ARAHI1.619e-4284.6230S ribosomal protein S11, chloroplastic OS=Arabis... [more]
RR11_LACSA2.114e-4283.6530S ribosomal protein S11, chloroplastic OS=Lactuc... [more]
RR11_BUXMI2.114e-4283.6530S ribosomal protein S11, chloroplastic OS=Buxus ... [more]
RR11_HELAN2.761e-4283.6530S ribosomal protein S11, chloroplastic OS=Helian... [more]
RR11_GUIAB2.761e-4283.6530S ribosomal protein S11, chloroplastic OS=Guizot... [more]
RR11_AETGR3.606e-4284.6230S ribosomal protein S11, chloroplastic OS=Aethio... [more]
RR11_AETCO3.606e-4284.6230S ribosomal protein S11, chloroplastic OS=Aethio... [more]
RR11_NYMAL4.710e-4284.4730S ribosomal protein S11, chloroplastic OS=Nympha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bp
GGGGGAATAACAATTATGAAAATAAGGGCTTCAGTTCGTAAAATTTGTGA
AAAATGTCGACTGATCCGCAGGAGGGGACGGATTATAGTAATTTGTTCCA
ACCCGAGACATAAACAAAGACAAGGATAATCTTTCGAAAAGTTTAGAAAG
TAACCGATGAACAAATCAACATAAAAGATCGGTTTTGACATGAAATGGAT
ATATCCATATATCTCTGACTTATATTTATGAAATGATCAAATATGGCAAA
ATCTCCACCACGAAGTGGTTCACGTAGGCCGGGACGGATCGGTTCACGTA
AAAGTGGACGTCGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTC
AACAACACCATTGTGACTGTTACAGATGTCCGGGGTCGGGTAATTTCTTG
GTCCTCGGCCGGTACTTGTGGATTCAGGGGTACAAGAAGAGGTACGCCTT
TTGCTGCTCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGCGGATCAA
GGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGA
TGCGGCATTACGAGCTATTCGTAGAAGCGGTATCCTTTTAAATTTCGTAC
GGGATGTAACCCCTATGCCACACAATGGTTGCAGACCCCCTAAAAAAAGA
CGGGTGTAGAAATAAACATTGAAGAGATTTCAAGAGAAATAAATGACTCA
ATGATCTGACAAATAATATTACTATGGTTCGAGAGAAAGTAAAAGTATCT
ACTCGGACACTACAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCG
TCTTTATTATGGGCGCTTTATTTTGTCTCCACTTATGAAAGGTCAAGCCG
ACACAATAGGCATTGCGATGCTGAGAGTTTTGCTTGNNNN
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