CK938881

Overview
NameCK938881
Unique NameCK938881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_NANDO (30S ribosomal protein S11, chloroplastic OS=Nandina domestica GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.053e-41
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTD+RGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEV IKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDIRGRVVSWSSAGTCGFRGTRRGTPFAAQTAASNAIRTVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CALFG (30S ribosomal protein S11, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.053e-41
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDV GRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVTGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVIDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_FAGEA (30S ribosomal protein S11, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps11 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.987e-41
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVI+VQA FNNTIVTVTDVRGRV+SW+SA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIYVQAGFNNTIVTVTDVRGRVVSWASAGTCGFKGAKRGTPFAAQTAAGNAIRKVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_AMBTC (30S ribosomal protein S11, chloroplastic OS=Amborella trichopoda GN=rps11 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.987e-41
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SW SA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSG+LL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWCSAGTCGFRGTRRGTPFAAQTAATNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGVLLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_COFAR (30S ribosomal protein S11, chloroplastic OS=Coffea arabica GN=rps11 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.208e-41
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGI+L FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFHNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGIVLTFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CICAR (30S ribosomal protein S11, chloroplastic OS=Cicer arietinum GN=rps11 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.883e-41
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVI+VQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAA NAIR V DQGMQRAEV+IKGPGLGRDAALRAIRRSGILL F+RDVTPMPHNGC
Sbjct:   27 KGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVIIKGPGLGRDAALRAIRRSGILLRFIRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_LEMMI (30S ribosomal protein S11, chloroplastic OS=Lemna minor GN=rps11 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.375e-40
Identity = 83/104 (79.81%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KG+IHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQ+AA NAIR V DQGMQRAEVMIKGPG GRDAALRAIRRSGILL+FVRD+TPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGAKRGTPFAAQSAAVNAIRTVVDQGMQRAEVMIKGPGPGRDAALRAIRRSGILLSFVRDITPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PHAAO (30S ribosomal protein S11, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps11 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.821e-40
Identity = 82/104 (78.85%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SW+SA            P+AAQ AA NAIR + DQGMQRAEVMIKGPGLGRDAALRAIRR+GILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWASAGTSGFRGTRKGTPYAAQAAAFNAIRTLVDQGMQRAEVMIKGPGLGRDAALRAIRRNGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CUSRE (Plastid 30S ribosomal protein S11 OS=Cuscuta reflexa GN=rps11 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.283e-39
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGM RAEV+IKGPGLGRDAALRAIRRSGILL FVRD+TPMPHNGC
Sbjct:   27 KGVIHVQASFHNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAATNAIRTVVDQGMLRAEVLIKGPGLGRDAALRAIRRSGILLTFVRDLTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_IPOPU (30S ribosomal protein S11, chloroplastic OS=Ipomoea purpurea GN=rps11 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.874e-39
Identity = 82/104 (78.85%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAA+TAA NAIR V D+GM RAEVMIKGPGLGRDAALRAI +SGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAETAASNAIRTVVDRGMLRAEVMIKGPGLGRDAALRAILQSGILLTFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_NANDO3.053e-4181.7330S ribosomal protein S11, chloroplastic OS=Nandin... [more]
RR11_CALFG3.053e-4182.6930S ribosomal protein S11, chloroplastic OS=Calyca... [more]
RR11_FAGEA3.987e-4181.7330S ribosomal protein S11, chloroplastic OS=Fagopy... [more]
RR11_AMBTC3.987e-4181.7330S ribosomal protein S11, chloroplastic OS=Ambore... [more]
RR11_COFAR5.208e-4181.7330S ribosomal protein S11, chloroplastic OS=Coffea... [more]
RR11_CICAR8.883e-4181.7330S ribosomal protein S11, chloroplastic OS=Cicer ... [more]
RR11_LEMMI3.375e-4079.8130S ribosomal protein S11, chloroplastic OS=Lemna ... [more]
RR11_PHAAO9.821e-4078.8530S ribosomal protein S11, chloroplastic OS=Phalae... [more]
RR11_CUSRE1.283e-3979.81Plastid 30S ribosomal protein S11 OS=Cuscuta refle... [more]
RR11_IPOPU4.874e-3978.8530S ribosomal protein S11, chloroplastic OS=Ipomoe... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bp
GGGGGAATAACAATTATGAAAATAAGGGCTTCAGTTCGTAAAATTTGTGA
AAAATGTCGACTGATCCGCAGGAGGGGACGGATTATAGTAATTTGTTCCA
ACCCGAGACATAAACAAAGACAAGGATAATCTTTCGAAAAGTTTAGAAAG
TAACCGATGAACAAATCAACATAAAAGATCGGTTTTGACATGAAATGGAT
ATATCCATATATCTCTGACTTATATTTATGAAATGATCAAATATGGCAAA
ATCTCCACCACGAAGTGGTTCACGTAGGCCGGGACGGATCGGTTCACGTA
AAAGTGGACGTCGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTC
AACAACACCATTGTGACTGTTACAGATGTCCGGGGTCGGGTAATTTCTTG
GTCCTCGGCCGGTACTTGTGGATTCAGGGGTACAAGAAGAGGTACGCCTT
TTGCTGCTCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGCGGATCAA
GGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGA
TGCGGCATTACGAGCTATTCGTAGAAGCGGTATCCTTTTAAATTTCGTAC
GGGATGTAACCCCTATGCCACACAATGGTTGCAGACCCCCTAAAAAAAGA
CGGGTGTAGAAATAAACATTGAAGAGATTTCAAGAGAAATAAATGACTCA
ATGATCTGACAAATAATATTACTATGGTTCGAGAGAAAGTAAAAGTATCT
ACTCGGACACTACAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCG
TCTTTATTATGGGCGCTTTATTTTGTCTCCACTTATGAAAGGTCAAGCCG
ACACAATAGGCATTGCGATGCTGAGAGTTTTGCTTGNNNN
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