CK938881

Overview
NameCK938881
Unique NameCK938881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_OENPA (30S ribosomal protein S11, chloroplastic OS=Oenothera parviflora GN=rps11 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.314e-39
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALRAIRRSGI L+ +RDVTP+PHNGC
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIRLSCIRDVTPLPHNGC 136
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_OENGL (30S ribosomal protein S11, chloroplastic OS=Oenothera glazioviana GN=rps11 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.314e-39
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALRAIRRSGI L+ +RDVTP+PHNGC
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIRLSCIRDVTPLPHNGC 136
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_OENEH (30S ribosomal protein S11, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps11 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.314e-39
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALRAIRRSGI L+ +RDVTP+PHNGC
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIRLSCIRDVTPLPHNGC 136
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_OENBI (30S ribosomal protein S11, chloroplastic OS=Oenothera biennis GN=rps11 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.314e-39
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALRAIRRSGI L+ +RDVTP+PHNGC
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIRLSCIRDVTPLPHNGC 136
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_OENAR (30S ribosomal protein S11, chloroplastic OS=Oenothera argillicola GN=rps11 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.314e-39
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIVTVTDVRGRVISWSSA            PFAAQTAAG+AIR V DQGMQRAEV IKGPGLGRDAALRAIRRSGI L+ +RDVTP+PHNGC
Sbjct:   33 KGVIHVQASFHNTIVTVTDVRGRVISWSSAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIRLSCIRDVTPLPHNGC 136
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CUSEX (Plastid 30S ribosomal protein S11 OS=Cuscuta exaltata GN=rps11 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.086e-38
Identity = 82/104 (78.85%), Postives = 85/104 (81.73%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASF+NTIV VTDVRGRV+SWSSA            PFAAQTAA  AIR V DQGM RAEV+IKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFHNTIVAVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAATKAIRTVVDQGMLRAEVLIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CYCTA (30S ribosomal protein S11, chloroplastic OS=Cycas taitungensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.418e-38
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRG+V+SWSSA            PFAAQTAA NAIR + DQGM+RAEVMI GPG GRD ALRAIRRSG+LL+FVRDVTPMPHNGC
Sbjct:   19 KGVIHVQASFNNTIVTVTDVRGQVVSWSSAGACGFKGTKRSTPFAAQTAAENAIRTLMDQGMERAEVMISGPGPGRDTALRAIRRSGVLLSFVRDVTPMPHNGC 122
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PEA (30S ribosomal protein S11, chloroplastic OS=Pisum sativum GN=rps11 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.159e-38
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVI++QASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAI+ V +QGMQRAEV IKGPGLGRDAALRAI RSGILL  +RDVTP+PHNGC
Sbjct:   27 KGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAGNAIQTVVEQGMQRAEVRIKGPGLGRDAALRAIYRSGILLKVIRDVTPLPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_MARPO (30S ribosomal protein S11, chloroplastic OS=Marchantia polymorpha GN=rps11 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.568e-37
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVTVTD+RG+V+SWSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GRD ALRAIRRSGI+L+FVRDVTPMPHNGC
Sbjct:   19 KGVIHIQASFNNTIVTVTDIRGQVVSWSSAGACGFKGTKKSTPFAAQTAAENAIRILIDQGMKQAEVMISGPGPGRDTALRAIRRSGIILSFVRDVTPMPHNGC 122
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PHYPA (30S ribosomal protein S11, chloroplastic OS=Physcomitrella patens GN=rps11 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.048e-37
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVTVTD+RG+V+ WSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GRD ALRAIRRSG++LNFVRDVTPMPHNGC
Sbjct:   19 KGVIHIQASFNNTIVTVTDIRGQVVFWSSAGACGFKGAKKSTPFAAQTAAENAIRVLIDQGMKQAEVMISGPGPGRDTALRAIRRSGVILNFVRDVTPMPHNGC 122
The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_OENPA8.314e-3978.8530S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENGL8.314e-3978.8530S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENEH8.314e-3978.8530S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENBI8.314e-3978.8530S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_OENAR8.314e-3978.8530S ribosomal protein S11, chloroplastic OS=Oenoth... [more]
RR11_CUSEX1.086e-3878.85Plastid 30S ribosomal protein S11 OS=Cuscuta exalt... [more]
RR11_CYCTA1.418e-3876.9230S ribosomal protein S11, chloroplastic OS=Cycas ... [more]
RR11_PEA3.159e-3876.9230S ribosomal protein S11, chloroplastic OS=Pisum ... [more]
RR11_MARPO1.568e-3774.0430S ribosomal protein S11, chloroplastic OS=Marcha... [more]
RR11_PHYPA2.048e-3773.0830S ribosomal protein S11, chloroplastic OS=Physco... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bp
GGGGGAATAACAATTATGAAAATAAGGGCTTCAGTTCGTAAAATTTGTGA
AAAATGTCGACTGATCCGCAGGAGGGGACGGATTATAGTAATTTGTTCCA
ACCCGAGACATAAACAAAGACAAGGATAATCTTTCGAAAAGTTTAGAAAG
TAACCGATGAACAAATCAACATAAAAGATCGGTTTTGACATGAAATGGAT
ATATCCATATATCTCTGACTTATATTTATGAAATGATCAAATATGGCAAA
ATCTCCACCACGAAGTGGTTCACGTAGGCCGGGACGGATCGGTTCACGTA
AAAGTGGACGTCGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTC
AACAACACCATTGTGACTGTTACAGATGTCCGGGGTCGGGTAATTTCTTG
GTCCTCGGCCGGTACTTGTGGATTCAGGGGTACAAGAAGAGGTACGCCTT
TTGCTGCTCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGCGGATCAA
GGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGA
TGCGGCATTACGAGCTATTCGTAGAAGCGGTATCCTTTTAAATTTCGTAC
GGGATGTAACCCCTATGCCACACAATGGTTGCAGACCCCCTAAAAAAAGA
CGGGTGTAGAAATAAACATTGAAGAGATTTCAAGAGAAATAAATGACTCA
ATGATCTGACAAATAATATTACTATGGTTCGAGAGAAAGTAAAAGTATCT
ACTCGGACACTACAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCG
TCTTTATTATGGGCGCTTTATTTTGTCTCCACTTATGAAAGGTCAAGCCG
ACACAATAGGCATTGCGATGCTGAGAGTTTTGCTTGNNNN
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