CK938881

Overview
NameCK938881
Unique NameCK938881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_DIOEL (30S ribosomal protein S11, chloroplastic OS=Dioscorea elephantipes GN=rps11 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.493e-37
Identity = 79/104 (75.96%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTV+DVRG+VISW+SA            P+AAQ AA NAIR + DQ MQRAEVMIKG G GRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVSDVRGQVISWASAGTSGFKGTRRGTPYAAQAAAVNAIRTIIDQDMQRAEVMIKGAGFGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ANGEV (30S ribosomal protein S11, chloroplastic OS=Angiopteris evecta GN=rps11 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.958e-37
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVTVTD+RG+V+SWSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GR+ ALRAIRRSG++L+FVRDVTPMPHNGC
Sbjct:   19 KGVIHIQASFNNTIVTVTDIRGQVVSWSSAGACGFKGTRKSTPFAAQTAAENAIRTLIDQGMKQAEVMISGPGPGRETALRAIRRSGVVLSFVRDVTPMPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ANEMR (30S ribosomal protein S11, plastid OS=Aneura mirabilis GN=rps11 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.782e-37
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            +GVIH+QASFNNTI+TVTD RGRV+SWSSA            PFAAQTAA NAIR + D+G+++AEVMI GPG GRD ALRAIRRSGI+LNFVRDVTPMPHNGC
Sbjct:   19 RGVIHIQASFNNTIITVTDTRGRVVSWSSAGACGFKGARKSTPFAAQTAAENAIRILIDRGLKQAEVMISGPGPGRDTALRAIRRSGIVLNFVRDVTPMPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PINTH (30S ribosomal protein S11, chloroplastic OS=Pinus thunbergii GN=rps11 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.862e-36
Identity = 76/104 (73.08%), Postives = 83/104 (79.81%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVI+VQASFNNTIVT TDVRG+V+SWSSA            PFAAQTAA N IRA+ D+GM+R EVMI GPG GRD ALR IRRSGILL+FVRDVTPMPHNGC
Sbjct:   19 KGVIYVQASFNNTIVTATDVRGQVLSWSSAGACGFKGTRRGTPFAAQTAAENVIRALMDRGMERVEVMISGPGRGRDTALRTIRRSGILLSFVRDVTPMPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CHAGL (30S ribosomal protein S11, chloroplastic OS=Chaetosphaeridium globosum GN=rps11 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.124e-35
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTIVT+TDVRG+VISWSSA            PFAAQTAA  A+R + DQGM++AEVMI GPG GRD ALR IR+SGI LNFVRDVTP+PHNGC
Sbjct:   19 KGVIHIQASFNNTIVTITDVRGQVISWSSAGACGFKGAKKSTPFAAQTAAEKALRPLIDQGMRQAEVMISGPGRGRDTALRIIRKSGITLNFVRDVTPIPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ANTFO (30S ribosomal protein S11, chloroplastic OS=Anthoceros formosae GN=rps11 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.468e-35
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            +GV H+QASFNNTI+TVTDVRG+V+SWSSA            PFAAQTAA NAIR + DQGM++AEVMI GPG GRD ALRAIRRSG++L++VRDVTP+PHNGC
Sbjct:   19 RGVTHIQASFNNTIITVTDVRGQVVSWSSAGACGFKGTKKSTPFAAQTAAENAIRILIDQGMKQAEVMISGPGPGRDTALRAIRRSGVVLSYVRDVTPIPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PINKO (30S ribosomal protein S11, chloroplastic OS=Pinus koraiensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.577e-35
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVI+VQASFNNTIVT TDVRG+VISWSSA            PFAAQTAA N IR + D+G+ R EVMI GPG GRD ALR IRRSGILL+FVRDVTPMPHNGC
Sbjct:   19 KGVIYVQASFNNTIVTATDVRGQVISWSSAGACGFKGTRRGTPFAAQTAAENVIRTLMDRGIGRVEVMISGPGRGRDTALRTIRRSGILLSFVRDVTPMPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_STAPU (30S ribosomal protein S11, chloroplastic OS=Staurastrum punctulatum GN=rps11 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.283e-35
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRG+ +SWSSA            PFAAQTAA NAI  + DQGM++AEVMI GPG GRD ALRAI+ SG++++FVRDVTPMPHNGC
Sbjct:   19 KGVIHVQASFNNTIVTVTDVRGQTMSWSSAGSCGFKGAKKSTPFAAQTAAENAISLLIDQGMRQAEVMISGPGPGRDTALRAIKNSGLVISFVRDVTPMPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ZYGCR (30S ribosomal protein S11, chloroplastic OS=Zygnema circumcarinatum GN=rps11 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.513e-35
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTI+T+TDVRG+VISWSSA            PFAAQ AA NA+R + DQGM++AEVM+ GPG GRD ALRAI  SGI L+FVRDVTPMPHNGC
Sbjct:   19 KGVIHVQASFNNTIITITDVRGQVISWSSAGASGFKAAKKSTPFAAQIAAENALRVLIDQGMKQAEVMLSGPGRGRDTALRAIINSGIQLSFVRDVTPMPHNGC 122          
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ADICA (30S ribosomal protein S11, chloroplastic OS=Adiantum capillus-veneris GN=rps11 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.513e-35
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIH+QASFNNTI+TVTDVRG+VI WSSA            PFAAQ AA NAI+A  D+GM++AEVM+ GPG GRD ALRAIRRSGI+L+F+RDVTPMP+NGC
Sbjct:   19 KGVIHIQASFNNTIITVTDVRGQVIIWSSAGACGFKGTRKSTPFAAQAAAENAIKASVDRGMKQAEVMMSGPGPGRDTALRAIRRSGIILSFIRDVTPMPYNGC 122          
The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_DIOEL3.493e-3775.9630S ribosomal protein S11, chloroplastic OS=Diosco... [more]
RR11_ANGEV5.958e-3772.1230S ribosomal protein S11, chloroplastic OS=Angiop... [more]
RR11_ANEMR7.782e-3772.1230S ribosomal protein S11, plastid OS=Aneura mirab... [more]
RR11_PINTH3.862e-3673.0830S ribosomal protein S11, chloroplastic OS=Pinus ... [more]
RR11_CHAGL1.124e-3571.1530S ribosomal protein S11, chloroplastic OS=Chaeto... [more]
RR11_ANTFO1.468e-3569.2330S ribosomal protein S11, chloroplastic OS=Anthoc... [more]
RR11_PINKO5.577e-3572.1230S ribosomal protein S11, chloroplastic OS=Pinus ... [more]
RR11_STAPU7.283e-3570.1930S ribosomal protein S11, chloroplastic OS=Staura... [more]
RR11_ZYGCR9.513e-3570.1930S ribosomal protein S11, chloroplastic OS=Zygnem... [more]
RR11_ADICA9.513e-3569.2330S ribosomal protein S11, chloroplastic OS=Adiant... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bp
GGGGGAATAACAATTATGAAAATAAGGGCTTCAGTTCGTAAAATTTGTGA
AAAATGTCGACTGATCCGCAGGAGGGGACGGATTATAGTAATTTGTTCCA
ACCCGAGACATAAACAAAGACAAGGATAATCTTTCGAAAAGTTTAGAAAG
TAACCGATGAACAAATCAACATAAAAGATCGGTTTTGACATGAAATGGAT
ATATCCATATATCTCTGACTTATATTTATGAAATGATCAAATATGGCAAA
ATCTCCACCACGAAGTGGTTCACGTAGGCCGGGACGGATCGGTTCACGTA
AAAGTGGACGTCGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTC
AACAACACCATTGTGACTGTTACAGATGTCCGGGGTCGGGTAATTTCTTG
GTCCTCGGCCGGTACTTGTGGATTCAGGGGTACAAGAAGAGGTACGCCTT
TTGCTGCTCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGCGGATCAA
GGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGA
TGCGGCATTACGAGCTATTCGTAGAAGCGGTATCCTTTTAAATTTCGTAC
GGGATGTAACCCCTATGCCACACAATGGTTGCAGACCCCCTAAAAAAAGA
CGGGTGTAGAAATAAACATTGAAGAGATTTCAAGAGAAATAAATGACTCA
ATGATCTGACAAATAATATTACTATGGTTCGAGAGAAAGTAAAAGTATCT
ACTCGGACACTACAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCG
TCTTTATTATGGGCGCTTTATTTTGTCTCCACTTATGAAAGGTCAAGCCG
ACACAATAGGCATTGCGATGCTGAGAGTTTTGCTTGNNNN
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