CK938880

Overview
NameCK938880
Unique NameCK938880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            D   + +V  L+WA T   L +AF+     + +K+I DR +GRSRGFGF+TF   ++M  A++ MN   L+GR + +N A
Sbjct:  214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RBY1B_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            MA  D   + F+GGL   T   +L E F  +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CK938880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HNRGT_HUMAN5.849e-1242.86RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
ROC5_NICSY9.977e-1240.0033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_CHICK9.977e-1248.68RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR9.977e-1248.68RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK9.977e-1248.68RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA9.977e-1248.68RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA9.977e-1248.68RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
RBY1B_MOUSE2.223e-1140.00RNA-binding motif protein, Y chromosome, family 1 ... [more]
RBM38_HUMAN2.223e-1147.37RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
RBM38_XENTR2.903e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938880 ID=CK938880; Name=CK938880; organism=Citrus sinensis; type=EST; length=700bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAGCAGTCAACGAGGCCCAGTCCCGTGGGAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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