CX675568

Overview
NameCX675568
Unique NameCX675568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = -1
Query:  218 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITR 649
            D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VLIGR  +Y LA  G+ GV+ ++E+ + E  + M LTG  S+  ITR
Sbjct:  229 DPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITR 372          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = -1
Query:  224 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 649
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD  P+T  AL  +  AVKG + IL D GVR G DV + +A+GA  +L+GR  +Y LA  GE GV  ++E+ + E  + M LTG  S+  +
Sbjct:  229 DPSISWKDLEWIREFWDGPMIIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVPSTARALPAIADAVKGDLAILADSGVRNGLDVVRMIAMGADTILLGRAYIYALATAGEAGVAHLLELFEKEMRVAMTLTGARSIAEL 370          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = -1
Query:  218 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITR 649
            D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VLIGR  +Y LA  G+ GV+ ++E+ + E  + M LTG  S+  ITR
Sbjct:  229 DPSISWKDLEWIREYWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITR 372          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  218 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITR 649
            D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VLIGR  +Y LA  GE GV+ ++ + + E  + M LTG  S+  ITR
Sbjct:  229 DPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALATHGEAGVKNLLALFEKEMRVAMVLTGAKSISEITR 372          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.252e-33
Identity = 78/175 (44.57%), Postives = 114/175 (65.14%), Query Frame = -1
Query:  200 LSTKVSSDTGSNFEADA---NETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAV-KGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRKHVRTE 712
            L+  VSS T S+ E  A   +  MDAS +W+ L WLR +    +L+KG+L+ EDA + +  G  G+I+SNHG RQLD     IS +E +  +V K   P+L+D G RRG+D+ KALALGA+AVL+GR  +YGLAA+GE GV  V+ +LK + + T+A  GCP +  ++  +++ E
Sbjct:  205 LANFVSSQT-SSLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLD---CAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 375          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.252e-33
Identity = 72/158 (45.57%), Postives = 101/158 (63.92%), Query Frame = -1
Query:  176 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRKHVRTEQERIHSML 649
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  ++  I++  +  E  RI S L
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMTLTGAKTISEISKDSLVQELSRIPSGL 386          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.553e-33
Identity = 79/167 (47.31%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  221 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 718
            G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  SV  I+
Sbjct:  205 GNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEIS 371          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.553e-33
Identity = 79/167 (47.31%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  221 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 718
            G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  SV  I+
Sbjct:  205 GNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEIS 371          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.553e-33
Identity = 79/167 (47.31%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  221 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIT 718
            G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  SV  I+
Sbjct:  205 GNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEIS 371          
BLAST of CX675568 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.553e-33
Identity = 70/156 (44.87%), Postives = 100/156 (64.10%), Query Frame = -1
Query:  182 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHITRKHVRTEQERIHS 649
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S++ I+R  +    E + +
Sbjct:  229 DPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKSIREISRDSLVQNAEALQT 384          
The following BLAST results are available for this feature:
BLAST of CX675568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_PSEP11.909e-3349.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CHRSD1.909e-3349.30L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_PSEPG2.493e-3349.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEE42.493e-3349.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
MDLB_PSEPU4.252e-3344.57(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD_ENT384.252e-3345.57L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_XANCP5.553e-3347.31L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB5.553e-3347.31L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC85.553e-3347.31L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_KLEP75.553e-3344.87L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63B07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63B07-C13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675568 ID=CX675568; Name=CX675568; organism=Citrus sinensis; type=EST; length=784bp
TACCGCCCCCCCCCCTTTTTTTTTTAATACCAAATGTTGTATAATATTAT
TATAATTCAATACTAATACAATACAAAATAATACAATACAACTGTATTAA
AATAATACAATACAACATAATATAATAGAGTGTGTCAAACGCACCCTTAA
ACATTTCTGCAACAGAATAATATTACAGCATCGAATGGATTCTCTCCTGC
TCAGTTCTCACATGCTTCCTGGTAATATGTTTCACACTAGGACAGCCAGT
AAGGGCCATGGTCAACTCAAACTCATCCTTCAGCATTTCGATGACGCGTC
TCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGACTACAGGCCTTCCA
ATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTGAAAACATCTGTTCC
TCGCCGCACTCCTCCATCCATAAGAATTGGAACTCTTCCTTTAACGGCAT
GAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGACTATAATCTAACTGT
CGAGCTCCGTGATTGGAGACAATAATCCCAGCAACACCTACTTCCACAGC
TTTTATTGCATCTTCACGAGTAAGTATCCCCTTGATCAAAATTGGTAAGT
TTGTAATAGATCTTAGCCATTCTAAATCCTTCCAACTTAAAGAAGCATCC
ATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCTGTATCAGAGCTGAC
TTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGGCGGTGTAATCATTT
TGTTCTTTATATCTGCCTCCCTTCTACCAAGTCT
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