CK938878

Overview
NameCK938878
Unique NameCK938878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_SALG2 (Chaperone protein dnaK OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIA------KMYQGGGADAGASMDED 711
            ET GGVMT LI +NT IPTK  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK +G++ KITI    G L++EEI+KMV++AE     D + ++ V+ +N  ++  ++ R  +  E+   KLP  DK  IE A+      L G   A     E KM+EL  +   ++          Q G ADA A+  +D
Sbjct:  402 ETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAIESALNALETALKGEDKA---AIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKD 623          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_SALEP (Chaperone protein dnaK OS=Salmonella enteritidis PT4 (strain P125109) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIA------KMYQGGGADAGASMDED 711
            ET GGVMT LI +NT IPTK  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK +G++ KITI    G L++EEI+KMV++AE     D + ++ V+ +N  ++  ++ R  +  E+   KLP  DK  IE A+      L G   A     E KM+EL  +   ++          Q G ADA A+  +D
Sbjct:  402 ETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPVDDKTAIESALNALETALKGEDKA---AIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKD 623          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_SALDC (Chaperone protein dnaK OS=Salmonella dublin (strain CT_02021853) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIA------KMYQGGGADAGASMDED 711
            ET GGVMT LI +NT IPTK  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK +G++ KITI    G L++EEI+KMV++AE     D + ++ V+ +N  ++  ++ R  +  E+   KLP  DK  IE A+      L G   A     E KM+EL  +   ++          Q G ADA A+  +D
Sbjct:  402 ETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAIESALNALETALKGEDKA---AIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKD 623          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_SALAR (Chaperone protein dnaK OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIA------KMYQGGGADAGASMDED 711
            ET GGVMT LI +NT IPTK  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK +G++ KITI    G L++EEI+KMV++AE     D + ++ V+ +N  ++  ++ R  +  E+   KLP  DK  IE A+      L G   A     E KM+EL  +   ++          Q G ADA A+  +D
Sbjct:  402 ETMGGVMTPLISKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAIESALSALETALKGEDKA---AIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKD 623          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_SALA4 (Chaperone protein dnaK OS=Salmonella agona (strain SL483) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIA------KMYQGGGADAGASMDED 711
            ET GGVMT LI +NT IPTK  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK +G++ KITI    G L++EEI+KMV++AE     D + ++ V+ +N  ++  ++ R  +  E+   KLP  DK  IE A+      L G   A     E KM+EL  +   ++          Q G ADA A+  +D
Sbjct:  402 ETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAIESALSALETALKGEDKA---AIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKD 623          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 107/228 (46.93%), Postives = 137/228 (60.09%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKM------YQGGGADAGASMDED 711
            ET GGV T LI RNT IPTKK QVFST  DNQ  V I+V++GER    DN LLG+F L  IPPAPRG+PQI V FDIDANGI++VSA+DK TG+   ITI    G LS E+IEKMV++AE     D + ++ VE KN  E+  ++ R +I++             K++ +  EAI+   G  L EA + ED  K   GI N   A M      Y+   A+ GA+ DE+
Sbjct:  398 ETLGGVFTRLIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKLLGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVSAKDKGTGKSQNITI-QASGGLSDEDIEKMVRDAEANAEADKKRRELVETKNQGESLLHSTRKSIEEH----------GDKVDPSTVEAIELAMG-ALEEALKSEDAGKIKGGIQNLTEAAMRLGEAIYKASQAEGGATPDEE 613          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS1 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 107/228 (46.93%), Postives = 137/228 (60.09%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKM------YQGGGADAGASMDED 711
            ET GGV T LI RNT IPTKK QVFST  DNQ  V I+V++GER    DN LLG+F L  IPPAPRG+PQI V FDIDANGI++VSA+DK TG+   ITI    G LS E+IEKMV++AE     D + ++ VE KN  E+  ++ R +I++             K++ +  EAI+   G  L EA + ED  K   GI N   A M      Y+   A+ GA+ DE+
Sbjct:  398 ETLGGVFTRLIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKLLGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVSAKDKGTGKSQNITI-QASGGLSDEDIEKMVRDAEANAEADKKRRELVETKNQGESLLHSTRKSIEEH----------GDKVDPSTVEAIELAMG-ALEEALKSEDAGKIKGGIQNLTEAAMRLGEAIYKASQAEGGATPDEE 613          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_RHIME (Chaperone protein dnaK OS=Rhizobium meliloti GN=dnaK PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 99/215 (46.05%), Postives = 135/215 (62.79%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADA 690
            ET GGV T LI RNT IPTKK QVFST  DNQ  V I+V +GER    DN LLG+F+L GIPPAPRGVPQI V FDIDANGI+ VSA+DK TG++++I I    G LS  EIEKMV++AE     D + ++ VEAKN  E+  ++   ++++     K+   D+K IEDAI      ++ ++  +A++ + K   L  +   +   +Y+    DA
Sbjct:  397 ETLGGVFTRLIERNTTIPTKKSQVFSTADDNQSAVTIRVSQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEHQIRI-QASGGLSDAEIEKMVKDAEANAEADKKRREGVEAKNQAESLVHSSEKSLQEH--GDKVSETDRKAIEDAIAALKSAVEVSE-PDAEDIKAKTNTLMEVSMKLGQAIYEAQQTDA 607          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_PICTO (Chaperone protein dnaK OS=Picrophilus torridus GN=dnaK PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 97/210 (46.19%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKM-KELEGICNPIIAKMYQ 672
            ET GGVMT LIP NT IPTKK Q+F+T +D Q  V I V +GER   +D+  LG F L GIPPAPRGVPQI V FDIDANGILNVSA+D  TG++  I+IT    +LSK+EIE+M +EAE+Y  +D + K+++E  N  E  AY    TI D     K+  + K+ +   +++    +    + +  E  +K+ KE++     I  KMYQ
Sbjct:  378 ETLGGVMTPLIPANTTIPTKKSQIFTTAADMQTTVTIHVVQGERPLAKDDVSLGMFNLDGIPPAPRGVPQIEVTFDIDANGILNVSAKDLGTGKQQSISIT-ATNKLSKDEIERMKKEAEQYAEQDKKAKEEIETINNAETLAYTAEKTIND--AGDKIDESSKESVRSIVKDLRDAISSKDINKIKELSEKLTKEIQ----EIGTKMYQ 580          
BLAST of CK938878 vs. ExPASy Swiss-Prot
Match: DNAK_METBF (Chaperone protein dnaK OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=dnaK PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.261e-42
Identity = 98/210 (46.67%), Postives = 134/210 (63.81%), Query Frame = 1
Query:   46 ETAGGVMTVLIPRNTAIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKK-KIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ 672
            ET GG+ T LIPRNT IPTKK QVFST +DNQP V I V +GER    +N  LG+F L GIPPAPRG+PQI V FDIDANGIL+V A+D  TG++  I+I    G LS +EI++MV++AE +  ED + K+ VE +N  E        T+K+   +A   T D+K K+  AI++  + L+G    ++++ + K + L+    PI   MYQ
Sbjct:  376 ETLGGIATPLIPRNTTIPTKKSQVFSTAADNQPSVEIHVLQGERGVASENKTLGRFTLDGIPPAPRGIPQIEVTFDIDANGILHVGAKDLGTGKEQSISI-QKPGGLSDDEIDRMVKDAELHAEEDKKRKEDVETRNNAEALINAAEKTLKEAGDAA---TEDQKSKVTAAIDDLKKALEGK---DSEDIKSKTEALQEAVYPISTAMYQ 578          
The following BLAST results are available for this feature:
BLAST of CK938878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SALG27.261e-4245.18Chaperone protein dnaK OS=Salmonella gallinarum (s... [more]
DNAK_SALEP7.261e-4245.18Chaperone protein dnaK OS=Salmonella enteritidis P... [more]
DNAK_SALDC7.261e-4245.18Chaperone protein dnaK OS=Salmonella dublin (strai... [more]
DNAK_SALAR7.261e-4245.18Chaperone protein dnaK OS=Salmonella arizonae (str... [more]
DNAK_SALA47.261e-4245.18Chaperone protein dnaK OS=Salmonella agona (strain... [more]
DNAK_RHOS47.261e-4246.93Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_RHOS17.261e-4246.93Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_RHIME7.261e-4246.05Chaperone protein dnaK OS=Rhizobium meliloti GN=dn... [more]
DNAK_PICTO7.261e-4246.19Chaperone protein dnaK OS=Picrophilus torridus GN=... [more]
DNAK_METBF7.261e-4246.67Chaperone protein dnaK OS=Methanosarcina barkeri (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_B06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938878 ID=CK938878; Name=CK938878; organism=Citrus sinensis; type=EST; length=832bp
GGGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGGTTTGGAGAC
TGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCGCTATTCCAA
CCAAGAAGGAGCAGGTGTTCTCCACATACTCTGACAACCAGCCCGGGGTG
TTGATCCAGGTCTACGAGGGTGAGCGCACAAGAACCCGTGACAACAACTT
GCTTGGAAAGTTTGAGCTCTCTGGCATTCCTCCTGCTCCAAGAGGGGTTC
CACAAATCAATGTGTGCTTTGACATTGATGCTAATGGTATCTTGAACGTT
TCCGCTGAGGACAAAACCACCGGACAGAAGAATAAGATTACCATCACAAA
TGACAAGGGCAGACTCTCTAAGGAGGAGATAGAGAAGATGGTACAAGAGG
CAGAAAAATACAAGGCCGAGGATGACGAGCACAAGAAAAAGGTGGAGGCC
AAGAATGCTCTTGAGAATTATGCTTACAACATGAGAAACACAATCAAGGA
TGAAAAGATCAGCGCAAAGCTTCCCACTGCTGACAAGAAGAAAATTGAAG
ATGCCATTGAGGAGGCCATCCAATGGCTTGACGGGAACCAGCTCGCAGAG
GCAGATGAGTTTGAAGATAAGATGAAAGAGCTGGAGGGCATCTGCAACCC
AATTATTGCCAAGATGTACCAAGGAGGTGGAGCTGATGCTGGTGCAAGTA
TGGATGAGGATGGTCCTTCTGCAGGTGCTGGTAGCGGTGCTGGCCCCAAG
ATTGAGGAGGTGGATTAAATTTGAGGATTTATGCTTAATGTTGTTTAATG
ATTAGGGGTTGAGTTGGGGAGTGTGATCTTTT
back to top