CN187909

Overview
NameCN187909
Unique NameCN187909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13737 contig Csv1_Contig13737:324..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.459e-34
Identity = 73/132 (55.30%), Postives = 96/132 (72.73%), Query Frame = -1
Query:  145 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFI 540
            LNT+G+S  RIDYAP+G  PPH HPRA+EI+ V+EG+L VGFVT+    N L ++ + KG+ FVFP GL+HFQ N G T A A +ALNSQ PG  +IA A+FGA PP+  D LA+AFQ+D   V+ ++ KF+
Sbjct:   91 LNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTA---NKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKSKFV 219          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  RIDYAP G  PPH HPRASE++ V+EG L VGF+T+    N L+SK + KG+ FVFP GL+HFQ N G+  A   SA NSQ PG  +I   +FGA+PP+  D LA+ FQ++ + V+ ++ KF
Sbjct:   96 LNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTA---NVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKF 223          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.127e-32
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  RIDYAP G  PPH HPRASE++ V+EG L VGF+T+    N L+SK + KG+ FVFP GL+HFQ N GK  A   SA NSQ PG  +I   +FGA+P +  D LA+ FQ++ + V+ ++ KF
Sbjct:   96 LNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTA---NVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKF 223          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  232 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLN--NTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFG 540
            LNTLGIS  R+D+AP+G  PPH HPRA+E+ +VLEGT +VGFVTS+  +  N L +KVLNKGD FVFP GLIHFQ NIG    V  S L+SQ PG ITIA+AVFG
Sbjct:   90 LNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFG 194          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.340e-31
Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLGIS   ++ AP G  PPH+HPRA+E+  V+EG++ VGF+++   NNTL SKVLN G+AFV P GL+HFQ+N+G+  A   +A NSQ PG + +   +FG+ P I    L +AF+ D  TV++L+ KF
Sbjct:   91 LNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLST---NNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKF 218          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  RIDYAP G  PPH HPRA+E++ VLEG L VGF+T+    N LI+K + KG+ FVFP GL+HFQ N G   A   +  NSQ PG + I   +F A PP+  + L KAFQ+  K V+ ++ KF
Sbjct:   86 LNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITT---TNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIGTKEVQKIKSKF 213          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 72/131 (54.96%), Postives = 90/131 (68.70%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  RIDYAP G  PPH+HPRASEI+ VLEG L+VGFVT+      LI+K LNKGD F FP GLIHFQ NI  + A   +A +SQ PG  ++  ++FGA P    D LAK+FQL  K VK ++ ++
Sbjct:   85 LNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTT---AGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGALP---DDILAKSFQLKHKQVKKIKLRY 209          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  RIDYAP G  PPH+HPRASE + VLEG L VGF+T+      LISK +NKGD FVFP  L+HFQ N  K  A   +A +SQ PG   +  ++FG+NPPI  D LAKAF      ++ ++ KF
Sbjct:   88 LNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTT---TGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIKGKF 215          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = -1
Query:  136 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFINGH 540
            +NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +  + N   SKV+  G+ FV P GL+HFQFN+GKT A    + NSQ PG + +   +FG+NPPI    L KA ++D   V+ L+ KF  G+
Sbjct:   95 VNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTGGY 229          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            +NTLG+S  RIDYAP GQ PPH HPRA+EI+ VLEG L VGF+T+    N L +K +  G+ FVFP GL+HFQ N G   A   +A NSQ  G   IA  +F A PP+  D LAKAF++D   V  ++ KF
Sbjct:   88 VNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTA---NKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAKF 215          
The following BLAST results are available for this feature:
BLAST of CN187909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL13_ORYSJ2.459e-3455.30Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS1.762e-3252.67Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
NEC1_NICPL5.127e-3252.67Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GLP1_MESCR2.544e-3164.76Germin-like protein OS=Mesembryanthemum crystallin... [more]
GLT1_ARATH4.340e-3149.62Germin-like protein subfamily T member 1 OS=Arabid... [more]
RHRE_PEA5.669e-3151.15Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL25_ARATH5.669e-3154.96Probable germin-like protein subfamily 2 member 5 ... [more]
GL23_ARATH5.669e-3152.67Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL34_ORYSJ2.154e-3046.67Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL11_ORYSJ2.154e-3051.91Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187909 ID=CN187909; Name=CN187909; organism=Citrus sinensis; type=EST; length=540bp
GCTACATCAGCCTGAAGAGAGGTTCATGAGCCATATTTTTTTTACATTAA
TTAAGATATGATAATCTGGACCTAAAACAATAAAGCCACTAGTAAAGAGG
CCATTTATATTAAAGCTCATTAATTCCTTCTCCTAATGGCCATTAATGAA
CTTATGCTGAAGATCTTTCACTGTCTTCGGGTCCAACTGGAATGCCTTGG
CAAGAAAATCGGGATTTATTGGAGGATTGGCTCCAAAGACCGCGTCGGCT
ATGGTAATTTCACCGGGGAACTGGCTGTTGAGAGCAGAATAGGCAACTGC
ATTTGTTTTTCCAATGTTGAATTGGAAATGAATCAAACCAATTGGAAACA
CAAAAGCATCTCCCTTATTCAGAACTTTTGAGATGAGTGTGTTATTCAGT
TGGTCTGATGTCACAAAACCGACGTGAAGAGTTCCTTCCAGGACCAACAG
GATTTCACTGGCACGGGGGTGAATATGAGGTGGCCTTTGGCCATATGGCG
CATAGTCAATACGGAATGCTGATATGCCAAGGGTGTTGAG
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