CN187909

Overview
NameCN187909
Unique NameCN187909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13737 contig Csv1_Contig13737:324..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.439e-28
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  139 NTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFING 537
            NTLG+S  R+D+AP G  PPHIHPRA+EI +V++G L VG + S    N L S+V+  G+ F+ P GL+HFQFN+GKT A      NSQ P  + +   +FG+NPPI    L KA +++   V+ L+ KF  G
Sbjct:   91 NTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAGG 223          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.661e-28
Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  RIDYAP G  PPH HPRA+E++ VLEG L VGF+T+    N L +K + KG+ FVFP GLIH+Q N  K   A   SA NSQ PG  +IA  +F A P I    L   FQ+  K ++ ++ KF
Sbjct:   87 LNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITT---ANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKF 215          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.490e-26
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  R+D AP G  P H HPRA+E++ V+ G +  GFV++        SKVL +G+ FV P G+IHFQ+N+G   A   +A NSQ PG +     +FG++P I    LAK+FQ+D K +K L+ KF
Sbjct:   98 LNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTA---GEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSKF 225          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.223e-25
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG++  R+D AP G  P H HPRA+E++ V+ G + VGFV++        SKV+ +G+ F  P GL+HFQ+N G  +A A +  NSQ PG +  A A+FGA+P I    LAK+FQ+D + +K L+ KF
Sbjct:  104 LNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTA---GKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.559e-25
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  145 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFI 540
            LNTLG SA R+D AP G  PPH HPRASE  +VL G ++ GFVTS   ++ +++KVL +GD F  P GL+HF  N G   A  Y++L+SQ PG + +ADA+  A  P+  D +AK    D  TV  ++  FI
Sbjct:   98 LNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTS-YPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRANFI 226          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.648e-25
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  232 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFG 540
            LNTLG+S  RIDYAP G  PPH HPRA+E++ VLEGTL VGF+T+    N LIS+ L KGD F FP GL+HFQ N G   A   +A NSQ PG  ++   +FG
Sbjct:   88 LNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTT---ANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFG 187          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLG+S  R D AP G  PPH HPRASE++LVL G + VGF T+    N L SKV+ + + FV P GL HFQ N+G  NA   +  +SQ PG +T   A+F   P +  + LAK F +    V  ++ KF
Sbjct:   94 LNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA---ANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAIKSKF 221          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLGIS  R D  P    PPH HPRA+E+  +++G ++ GFV S   NN + +KV+ +G+  V+P GL+HFQ N+G   A     LNSQ PG   I   VFG+   IN + L KAF L  K +  L+ +F
Sbjct:   94 LNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDS---NNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGSG--INEELLMKAFGLSLKQIGTLKKRF 219          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLGIS + +  AP G   PH HP  +E  +V+EG++ VGF+T+   N TL SKV+  GD FV P GLIH++ N+GKT     + +    P E+ +   +    P I  + L  AF+ D KT+  L+ KF
Sbjct:   98 LNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTT---NYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKF 225          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = -1
Query:  148 LNTLGISAFRIDY-APYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            L+TLG+S  R D  A  G  PPH HPRA+E  LVL G ++ GFV S      L +KVL +G+  VFP  ++HFQ N+G T A  Y A NS+ PG + I   VFG+   I    L +AF L P  ++ L+ +F
Sbjct:   93 LHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGSG--IREAVLERAFGLTPAELRRLEKRF 219          
The following BLAST results are available for this feature:
BLAST of CN187909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GER3_WHEAT3.439e-2846.62Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL24_ARATH7.661e-2850.00Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL38_ORYSJ5.490e-2645.80Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL37_ORYSJ1.223e-2545.80Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL51_ORYSJ3.559e-2546.97Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL21_ARATH4.648e-2556.31Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL12_ORYSJ2.550e-2345.80Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL32_ARATH5.682e-2344.27Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GLT3_ARATH2.820e-2241.22Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL24_ORYSJ2.387e-2143.94Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187909 ID=CN187909; Name=CN187909; organism=Citrus sinensis; type=EST; length=540bp
GCTACATCAGCCTGAAGAGAGGTTCATGAGCCATATTTTTTTTACATTAA
TTAAGATATGATAATCTGGACCTAAAACAATAAAGCCACTAGTAAAGAGG
CCATTTATATTAAAGCTCATTAATTCCTTCTCCTAATGGCCATTAATGAA
CTTATGCTGAAGATCTTTCACTGTCTTCGGGTCCAACTGGAATGCCTTGG
CAAGAAAATCGGGATTTATTGGAGGATTGGCTCCAAAGACCGCGTCGGCT
ATGGTAATTTCACCGGGGAACTGGCTGTTGAGAGCAGAATAGGCAACTGC
ATTTGTTTTTCCAATGTTGAATTGGAAATGAATCAAACCAATTGGAAACA
CAAAAGCATCTCCCTTATTCAGAACTTTTGAGATGAGTGTGTTATTCAGT
TGGTCTGATGTCACAAAACCGACGTGAAGAGTTCCTTCCAGGACCAACAG
GATTTCACTGGCACGGGGGTGAATATGAGGTGGCCTTTGGCCATATGGCG
CATAGTCAATACGGAATGCTGATATGCCAAGGGTGTTGAG
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