CN187909

Overview
NameCN187909
Unique NameCN187909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13737 contig Csv1_Contig13737:324..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            +N LGISA R+D  P G  P H HP  SE+L VL+G L  GF++S   +N +  K ++KG  FVFP GL+HFQ+N G T AVA++A +S  PG   +  A+F  N P +  ++ K   L    V+ L+ KF
Sbjct:   89 VNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTS--YVVKGTFLAEAEVRRLKSKF 215          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = -1
Query:  157 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 540
            LN   +S   + Y P    PPH HPR++E+LL+++G L VGFV +    N L ++ L  GD FVFP G++HFQFN G   A+A SA  S   G +++   VFG N  I+   LAK+F+ D  T++ L+
Sbjct:   83 LNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  157 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 540
            LN   +S   + + P    PPH HPR++E+LLV++G L VGF+ +    N L ++ L  GD FVFP G++HFQFN G   A+A SA  S  PG + +   VFG    I+   LAK+F+ D  T+  L+
Sbjct:   83 LNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTG--IDDAVLAKSFKTDVPTILKLK 205          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 56/128 (43.75%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  157 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 540
            +N LGIS  R+D  P G  P H HP ASE+LLV++GT+  GFV SD   NT   K L KGD  VFP GL+HFQ N G T A+A+ + +S  PG   +  A+F     +  + +A+   LD   +K L+
Sbjct:   80 VNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALF--KNDLATELIAQTTLLDAPQIKKLK 202          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  157 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 540
            +N LGIS  R+D  P G  P H HP ASE+LLV++GT+  GFV SD   NT   K L KGD  VFP GL+HFQ N G T A+A+ + +S  PG   +  A+F  + P   + +A+   LD   +K L+
Sbjct:   80 VNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLP--TELIAQTTFLDAAQIKKLK 202          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = -1
Query:  169 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGK-TNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTV 540
            LNT+G++  R+D+   G  PPH+HPRASE+ + L+G L VGFV +   +  + ++ L+ G+ FVFP GLIHF +NI   ++A+A S L+SQ PG   ++ + F + PP   + L  A+ ++ + V
Sbjct:   87 LNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDINGQDV 208          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 52/128 (40.62%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  157 NTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIG-KTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 537
            N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L +++L  G+AFVFP  ++HF +N+     AV  S LNSQ PG   +  + F   P +  + L KAF++  + V+ +Q
Sbjct:   95 NAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.448e-18
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  157 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 540
            LN LGIS  R+D AP G  P H HP ASE+L VL+G++  GF++S    N++  + L  G   VFP GL+HFQ N GKT A A    +S  PG + I D    AN  ++ + ++    L P TVK L+
Sbjct:   78 LNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS---ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPG-LQILDFALFAN-TLSTELVSATTFLPPATVKTLK 200          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  157 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 540
            +N LGISA R+D A  G  P H HP ASE+L V +GT+  GF+TS   +NT+ ++ L  GD  VFP GL+H+Q+N G++ AVA  A +   PG      A+F  N P     + K   LD   VK L+
Sbjct:   83 VNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLP--SAIVEKVTFLDDAQVKKLK 206          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  220 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPP 540
            +N LG+S  R+D A  G  P H HP ASE+L+V++GT+  GF++S    N +  K LN+GD+ VFP GL+HFQ N GK  A+A+ A  S  PG   +  A+F  + P
Sbjct:   82 INGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSA---NKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP 185          
The following BLAST results are available for this feature:
BLAST of CN187909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL813_ORYSJ2.021e-2043.51Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL93_ORYSJ7.679e-2042.19Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL92_ORYSJ1.310e-1941.41Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
AB19B_PRUPE2.234e-1943.75Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
AB19A_PRUPE2.918e-1944.53Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL11_ARATH4.977e-1940.00Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL31_ORYSJ8.490e-1940.63Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GLP1_BRANA1.448e-1842.97Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL814_ORYSJ5.503e-1842.97Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL33_ARATH7.187e-1844.86Germin-like protein subfamily 3 member 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187909 ID=CN187909; Name=CN187909; organism=Citrus sinensis; type=EST; length=540bp
GCTACATCAGCCTGAAGAGAGGTTCATGAGCCATATTTTTTTTACATTAA
TTAAGATATGATAATCTGGACCTAAAACAATAAAGCCACTAGTAAAGAGG
CCATTTATATTAAAGCTCATTAATTCCTTCTCCTAATGGCCATTAATGAA
CTTATGCTGAAGATCTTTCACTGTCTTCGGGTCCAACTGGAATGCCTTGG
CAAGAAAATCGGGATTTATTGGAGGATTGGCTCCAAAGACCGCGTCGGCT
ATGGTAATTTCACCGGGGAACTGGCTGTTGAGAGCAGAATAGGCAACTGC
ATTTGTTTTTCCAATGTTGAATTGGAAATGAATCAAACCAATTGGAAACA
CAAAAGCATCTCCCTTATTCAGAACTTTTGAGATGAGTGTGTTATTCAGT
TGGTCTGATGTCACAAAACCGACGTGAAGAGTTCCTTCCAGGACCAACAG
GATTTCACTGGCACGGGGGTGAATATGAGGTGGCCTTTGGCCATATGGCG
CATAGTCAATACGGAATGCTGATATGCCAAGGGTGTTGAG
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