CN187906

Overview
NameCN187906
Unique NameCN187906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1
Query:  460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744
            +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = -1
Query:  460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744
            +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT R  ++L +A+
Sbjct:  251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRWNTILRQAR 345          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = -1
Query:  457 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQR 744
            +WT+SAF +L++++G + K S  KKGY LP+ KM N DL+R++ S+E++ V+R  +  V R+                 PYA+  +R + LA  +R
Sbjct:  254 IWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKR 349          
The following BLAST results are available for this feature:
BLAST of CN187906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RL4_BOVIN2.920e-1238.9560S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]
RL4_MACFA1.449e-1137.8960S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4_DROME9.392e-1135.4260S ribosomal protein L4 OS=Drosophila melanogaste... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005D07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187906 ID=CN187906; Name=CN187906; organism=Citrus sinensis; type=EST; length=744bp
AGTAGAATTCTAATTTTTAAGTATAAATAGTACCATTAAGCCTATAAATC
CACCTCCTAAAACATATAACTCCAATTCTAACTTTAAAGAAAGTTCTTTC
ACCTTGCCTATAAAGACAAAAAAGCTGGGAGGAAAAACAGACGTCGAAAC
ATTGACCATTCAGCTTATCTTCCTTCCAAACATTCTCATCCATGACTCAA
AACAGCAAAAGATACTAAAATTCAACAGCAAATCCACAAAGATTAACAAG
ATATTGTCTCAAAAATCAAAATTTAAAAACCAACAATCAGATTACTGTGA
GACACCAAGCCACTTCGAGAAGTTCTCGAACTCGGTATAATCACTGTCTG
AGATCATAGTCTGGTACCATGCCTTGCCGGCAGACTTGATTGCAGCTGCC
TCCTCCTTAGTGATGGGCTTCCTCTTCTTGTCGAGCTTCTCCTTCTTAGC
TTTAACCCGTTGTGCCTCAGCCAAAAGTGACATCCGCCGAGCAGTCTTAG
CATATGGGTTCAACCTCAACAGAGTATTCAAGTTCTTGAGAGGATTCTTC
TTCATCGGAGCCCTCTTAACCTCCGTCTTAATCGGCCTGACAACAGACTG
CACCTCATCCGAGTTAATAATCCTAGCCAAATCAGCGTTGACCATCTTGG
AACGAGGCAGCACATAACCCTTCTTCTTCTCGGAACCCTTATCAAACTTA
CCATAAATCTCATCAAGCTTCTCAAAAGCCGATTTAGTCCAAAC
back to top