CN187891

Overview
NameCN187891
Unique NameCN187891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187891 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 50/166 (30.12%), Postives = 77/166 (46.39%), Query Frame = -3
Query:  280 VGQLKEYDGKKLVSATKEGLNLXXXXXXXXXXXXXXKS---FENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDXXXXXXXXSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFAARIHRML 768
            V  L EY  KKL +  +  ++L              ++   + +L   IK  L D+V+   +S R+ DS CCLV  EYG +ANMERI+KA             SK+ +E+NPD+ IM+ + +    +K D  + D          LT G  + DP  F   +  ++
Sbjct:  480 VQALTEYKEKKLKAVDRGDVDLDSEEEKKEKETKQEEARKEYGDLISFIKSHLEDRVKDARLSKRLTDSACCLVADEYGINANMERILKAM------NQPVPDSKRVLELNPDHPIMKIMTEIFRENKEDARLTDYADLLYDQALLTEGSPIKDPLRFTRLVSELM 639          
BLAST of CN187891 vs. ExPASy Swiss-Prot
Match: HTPG_GEOSL (Chaperone protein htpG OS=Geobacter sulfurreducens GN=htpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = -3
Query:  280 LKEYDGKKL--------VSATKEGLNLXXXXXXXXXXXXXXKSFENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDXXXXXXXXSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFAARIHRML 759
            L EY GKKL        + AT+E                  K + +L   +KE L ++V++V +S+R+ DS CCLV  E+G +ANMERI++A             SK+ +E+NPD+ IM+ +      DK +  + D          LT G  + DP  F   +  ++
Sbjct:  484 LPEYGGKKLKAVDRGDVIPATEE-----EKKEQEAKREEAAKQYGDLLSFVKEKLAERVKEVRLSNRLTDSACCLVADEHGLNANMERILRAM------NQTVPESKRILELNPDHPIMQVMATLFGKDKTNPRLADYCDLLYDQALLTEGSPIADPLRFTRLVAELM 640          
BLAST of CN187891 vs. ExPASy Swiss-Prot
Match: HTPG_HAHCH (Chaperone protein htpG OS=Hahella chejuensis (strain KCTC 2396) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 53/167 (31.74%), Postives = 78/167 (46.71%), Query Frame = -3
Query:  280 VGQLKEYDGKKLVSATKEGLNLXXXXXXXXXXXXXXKS--FENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKA--QALRDXXXXXXXXSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFAARIHRML 768
            +  L E+DGK      K  L+L               S   E L   +KE+L D VE+V V+ R+ DSP CLV G Y     M RIM+A  QAL +        SK T EINPD+ ++++L      ++     +D          L  G +L DP  + +R++++L
Sbjct:  481 MSHLNEFDGKHFQDIAKGELDLGEVEDKEEKEKQEEVSKEAEPLLNRLKEVLKDHVEEVRVTHRLTDSPACLVVGAYDMGVQMRRIMEAAGQALPE--------SKPTFEINPDHPLVKKLG-----EEQGARFEDLTWVLFDQARLAGGENLKDPAGYVSRLNKLL 634          
BLAST of CN187891 vs. ExPASy Swiss-Prot
Match: HTPG_GEOMG (Chaperone protein htpG OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=htpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 47/161 (29.19%), Postives = 77/161 (47.83%), Query Frame = -3
Query:  280 EYDGKKLVSATKEGLNLXXXXXXXXXXXXXXKSFE---NLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDXXXXXXXXSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFAARIHRML 753
            EYDGKKL +  +  +                ++F+   +L   +KE L  +V++V +S R+ DS CCLV  E+G +ANMERI++A             SK+ +E+NPD+ +M+ +      DK +  + D          LT G  + DP  F   +  ++
Sbjct:  486 EYDGKKLKAVDRGDVIPATEEEKKEQEAKREEAFKQYGDLLSFVKEKLDARVKEVRLSSRLTDSACCLVADEHGLNANMERILRAM------NQDVPESKRILELNPDHPLMQVMANLFARDKANPRLGDYCDLLYDQALLTEGSPISDPLRFTRLVAELM 640          
BLAST of CN187891 vs. ExPASy Swiss-Prot
Match: HTPG_METCA (Chaperone protein htpG OS=Methylococcus capsulatus GN=htpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 51/166 (30.72%), Postives = 76/166 (45.78%), Query Frame = -3
Query:  277 VGQLKEYDGKKLVSATKEGLNLXXXXXXXXXXXXXXK--SFENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDXXXXXXXXSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFAARIHRMLK 768
            V  L EY+GK L S  +  L+L              +  +F  L + +K+ L  KV  V +S R+ DSP CL++  YG S  MERIMK+             SK  +EINP +G++  L   A+  +     +D          L  G  LDDP  F  +++ +L+
Sbjct:  476 VSYLTEYEGKPLQSVARGDLDLGKLEGEEEKAEAAAEKEAFAPLTERLKKALEAKVNDVRLSHRLTDSPACLISESYGMSRTMERIMKSAG------QNIPGSKPILEINPHHGLIARLNTEADQTR----FQDLASLLLDQAVLAEGGQLDDPAEFVHKLNGLLQ 631          
The following BLAST results are available for this feature:
BLAST of CN187891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
HTPG_PELPD3.406e-1130.12Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_GEOSL4.449e-1130.36Chaperone protein htpG OS=Geobacter sulfurreducens... [more]
HTPG_HAHCH5.811e-1131.74Chaperone protein htpG OS=Hahella chejuensis (stra... [more]
HTPG_GEOMG7.589e-1129.19Chaperone protein htpG OS=Geobacter metallireducen... [more]
HTPG_METCA9.911e-1130.72Chaperone protein htpG OS=Methylococcus capsulatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187891 ID=CN187891; Name=CN187891; organism=Citrus sinensis; type=EST; length=773bp
GAGGCTAAAGGGTAATCATCTTACACGGCATAAGAAAATACACAAGACTC
AACAAGACTCAGCTAACCATAGCCAATAACTAAGCAGAAAGCCAAAAGTC
AATCCACTTCCATGAGACTTTATATACCATCACTCCATTGCGCGCTAATA
ACAGCGTTCCTCTCTCCCTCCTTAGTCGACTTCCTCCATCTTGCTCTCCT
CATTTCCTTCATCCTCCAATGGTGGCATCTCAGCATCATCACCAGCAGTC
TCATCCTCTTCAATGCTCAGACCCAACTTGAGCATCCTGTGAATCCTTGC
AGCAAATGTGTTCGGATCATCCAGACTGAAACCAGAGGTCAACAGAGCAG
TCTCATAGAGCAGCAGGACAAGATCCTTCACTGACTTGTCATTCTTATCA
ACCTCAGCTCTCTTTCTGAGTTCCTCCATTATGCCATTGTCAGGATTTAT
TTCCATAGTCTTTTTGCTTGACATGTATGAGCTCATGCTGCTATCTCTCA
AAGCCTGAGCTTTCATTATCCTCTCCATGTTCGCCGACCAGCCATACTCA
CCGGTGACCAAACAGCAAGGAGAGTCTACAATTCTGTCAGATACGACAAC
TTTCTCCACCTTGTCTCCAAGAATTTCCTTGATTGTCTTGCACAAGTTCT
CGAAAGACTTCTTTTTTTCCTCCCTTTTCTTCTTCTCTTCCTCATCTTCT
TCCAGGTTTAGCCCCTCTTTGGTGGCTGAGACAAGCTTCTTTCCATCGTA
CTCTTTCAACTGACCAACAGCAT
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