CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.579e-29
Identity = 58/101 (57.43%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            GQVIGCH ++ W  QL  + ++ +L+V+DFTASW  PCR IAP  A LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L
Sbjct:    6 GQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDL 106          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.675e-29
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G VI CH  + ++ Q+ K+ E  ++V++DFTASW GPCRFIAP  A+ AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++L
Sbjct:    6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 105          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.675e-29
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G VI CH  + ++ Q+ K+ E  ++V++DFTASW GPCRFIAP  A+ AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++L
Sbjct:    6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 105          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G+VI CHTVE WN +L+ + E+ +L+V+DFTA W  PCRFIAP   +LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G+VI CHTVE WN +L+ + E+ +L+V+DFTA W  PCRFIAP   +LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G+VI CHTVE WN +L+ + E+ +L+V+DFTA W  PCRFIAP   +LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20
Identity = 41/93 (44.09%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  134 TVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            T E+W+++L +++   ++VV +F+A+W GPC+ +APF  +L++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VGA K EL
Sbjct:   30 TKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPEL 122          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 40/93 (43.01%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  134 TVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            T E W+++L +++   ++V+ +F+A W GPC+ IAP+  +L++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VGA K EL
Sbjct:   31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.969e-19
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  146 WNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            W     +  E+ +L+VVDF+ASW GPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++GAKK+EL
Sbjct:   36 WQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDEL 124          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.176e-18
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  GA KE+L
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKL 97          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXH2_BRANA3.579e-2957.43Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_ORYSJ4.675e-2958.00Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.675e-2958.00Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRARA5.168e-2857.00Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL5.168e-2857.00Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA5.168e-2857.00Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH9_ARATH3.037e-2044.09Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC3.966e-2043.01Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH2_ARATH1.969e-1948.31Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE2.176e-1850.00Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
back to top