CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            EA+ E L  + +  +LVVVDF+A+W GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            EA+ E L  + +  +LVVVDF+A+W GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17
Identity = 43/91 (47.25%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            +A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.406e-17
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.105e-17
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  GA KE+L
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G VI   +  AW+ QL K  E  + +VVDFTA+W GPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKL 103          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
THIO_SHEEP1.080e-1748.89Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG1.080e-1748.89Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_RAT1.411e-1749.45Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_MOUSE1.411e-1749.45Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_BOVIN1.411e-1748.89Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_CALJA1.842e-1747.25Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN2.406e-1747.78Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU3.143e-1747.78Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT4.105e-1746.67Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
TRXH_CHLRE1.560e-1644.55Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
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