CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-16
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  179 KQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            ++LVVVDF+A+W GPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  GA KE+L
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEEL 412
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKL 98          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  167 SNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            SN   +L+VVDF+A+W GPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  116 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            +V+   + E+WN  + ++      +V  FTA W  P  F+  F  +LA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEI 101          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  182 QLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEEL 412
            +LVV+DFTASW GPC+ IAP   ++AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGL 98          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  182 QLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            +LVVVDF A+W GPC+ IAP + K +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGA 90          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.248e-14
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            NE L+KS ++ +L++VDF A+W GPCR I+P   +L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V GA +  +
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAI 99          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  182 QLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            +LVVVDF A+W GPC+ IAP + K A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGA 91          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            N QL K++   +LVV+DF A+W GPC+ I+P LA+L+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRL 98          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  161 QKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            Q +  + +LVV+DF A+W GPC+ I+P L +L+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 106          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
THIO_CHICK3.475e-1650.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB5.927e-1647.25Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_OPHHA5.927e-1645.12Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
TRXL4_ARATH1.725e-1541.41Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_GEOCY8.559e-1552.56Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRX1_YEAST1.907e-1454.17Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
NGLY1_CAEBR4.248e-1440.91Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRX2_YEAST5.548e-1451.39Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO2_DROYA5.548e-1444.94Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME7.245e-1443.53Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
back to top