CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            E +   L+++ E  +LV VDF+A+W GPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ GA KE+L
Sbjct:  457 EDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKL 545          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  119 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            V+    + A++  L+ + +  +LVVVDFTA+W GPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  GA ++ L
Sbjct:    2 VVHIENLNAFSAALKNAGD--KLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTL 99          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            +V+DF A+W GPC+ + P L KL +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++GA    L
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTAL 120          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  122 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            +G   +++  E  +K  +    VVVDF A+W GPC+ IAP L KL++    + F KVDVDEL  VA    V AMPTF F K G+  ++V GA
Sbjct:    1 MGVTPIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGA 92          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  152 EQLQKSNETK------QLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            +Q+  S+E K      +LVVVDF A+W GPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKL 95          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.596e-13
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  161 QKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            +K    K  VVVD  A+W GPC+ IAP + K A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGA 96          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  152 EQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            ++  K   + +++++DF A+W GPCR I+P   K ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTAL 97          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  152 EQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            EQL + +  K ++++DF A+W GPC+ IAP   +LA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDEL 104          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  182 QLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            +LV+VDF A W GPC+ IAPF  + +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++GA    L
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSAL 95          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  185 LVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            LV++DF A W GPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K ++
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKD 92          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TXND2_HUMAN9.463e-1442.86Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
THIO_ICTPU9.463e-1440.00Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
TRX3_YEAST1.236e-1344.00Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_PENCH1.614e-1344.57Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRX1_SCHPO2.753e-1339.78Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_EMENI3.596e-1345.57Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_COPCM4.696e-1335.96Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO1_CAEEL6.134e-1339.08Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_PLAF71.046e-1244.16Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_CHLTR1.046e-1242.67Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
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