CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  182 QLVVVDFTASWGGPCRFIAPFLAKLAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            +LVV+DF A W GPC+ IAP L +LA +  + V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKL 98          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            N  L++S +  +L+++DF A+W GPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ +
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAI 99          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  119 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKL--PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            VI   + + W   + KS      + VD  A W GPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D + GA  + L
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQAL 98          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 379
            N++LQK   +   VVVDF A W  PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQV 87          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  152 EQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK 403
            + L+ + +  +L+V DF A+W GPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANE 96          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            VV+D    W GPC+ +AP   +LA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKL 181          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  176 TKQLVVVDFTASWGGPCRFIAPFLAKLAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 379
            T Q VV DF A W GPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  185 LVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            LV+VDF A W GPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K +E
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKE 92          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 28/80 (35.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  155 QLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG 394
            +L +   T + VVVDF A+W GPC+ + P   ++A+   +  F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIG 88          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            VVVDF A W GPC+ + P L K+ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDED 155          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
THIOT_DROME1.366e-1243.59Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
NGLY1_CAEEL1.366e-1237.50Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXL1_SCHPO1.785e-1238.00Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_FUSCU1.785e-1248.75Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_ECHGR3.044e-1241.67Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR3.976e-1247.37Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_NEUCR3.976e-1252.11Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO_CHLPN3.976e-1244.00Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_MYCGA5.192e-1235.00Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIOM_RAT5.192e-1245.33Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
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