CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            VVVDF A W GPC+ + P L K+ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDED 155          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            VVVDF A W GPC+ + P L K+ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDED 155          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            NE LQ    +++LV+VDF A W GPCR I P L ++AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA
Sbjct:   11 NEVLQ----SEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGA 88          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 31/75 (41.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  176 TKQLVVVDFTASWGGPCRFIAPFLAKLAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            +++LV+VDF A W GPCR I+P + +LA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGA 93          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            VVVDF A W GPC+ + P L K+ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDED 155          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  185 LVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            LV+VDF A W GPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K ++
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKD 92          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  185 LVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 409
            LV++DF A W GPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K ++
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKD 92          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  188 VVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            VV+D    W GPC+ IAP   +L++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V GAK ++L
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDL 172          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  161 QKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 397
            Q+  E+   V+VDF A W GPCR +AP + ++A++  + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD VVGA
Sbjct:   14 QEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGA 93          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  182 QLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            ++VV+D    W GPC+ IAP   +L++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V GAK E+L
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDL 175          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
THIOM_MOUSE5.192e-1245.33Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN5.192e-1245.33Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_CYAME6.781e-1243.37Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_CYACA6.781e-1241.33Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIOM_BOVIN6.781e-1245.33Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO_CHLMU8.857e-1242.67Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_CHLCV1.973e-1140.00Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRXF_PEA2.577e-1143.42Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
THIO1_SYNE75.741e-1142.50Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
TRXF2_ARATH7.498e-1139.74Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
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