CK938802

Overview
NameCK938802
Unique NameCK938802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  163 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDS 498
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +      GI A+HIK+R  GG   K PGP            G+  GRIEDVTPIP D+
Sbjct:   16 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.461e-22
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  163 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTD 495
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +      GI A+HIK+R  GG   K PGP            G+  GRIEDVTPIP D
Sbjct:   15 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.236e-21
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  163 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTD 495
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +      GI A+HIK+R  GG   K PGP            G+  GRIEDVTPIP D
Sbjct:   10 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS14_TOBAC (40S ribosomal protein S14 (Fragment) OS=Nicotiana tabacum GN=RPS14 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  337 KELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            KELGI ALHIKLRATGGNKTKTPGP            GMK GRIEDVTPIPTDST
Sbjct:    1 KELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 55          
The following BLAST results are available for this feature:
BLAST of CK938802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS11_PYRIL3.252e-2247.3230S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_PYRAR9.461e-2246.8530S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]
RS11_PYRAE1.236e-2146.8530S ribosomal protein S11P OS=Pyrobaculum aerophil... [more]
RS14_TOBAC2.948e-1574.5540S ribosomal protein S14 (Fragment) OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938802 ID=CK938802; Name=CK938802; organism=Citrus sinensis; type=EST; length=764bp
CGGGGATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCC
TAGCCTTCTCAATCCATCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGA
ATAGGGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGAT
GGGGAGCATGTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATAC
ATTTATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCA
CTGGTGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCT
GCCATGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAAT
CACTGCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAA
CACCTGGTCCAAGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGG
ATGAAATTTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCAC
ACGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTG
TCCGATTGTCTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTT
AAAGTTAGTTGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTAT
CTGTCGCTATTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGG
CGGCCTTGAGAGCATATGGCATTACTGGTGTCTTGCATTGCGTGTTATGT
CATTGAATTAATTT
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