CN187889

Overview
NameCN187889
Unique NameCN187889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.961e-44
Identity = 83/192 (43.23%), Postives = 115/192 (59.90%), Query Frame = -3
Query:  271 ATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIR 846
            A  N AK + G SVA+F            AR + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN AFDLM  G+SIR +IR
Sbjct:  177 AVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          

HSP 2 Score: 31.5722 bits (70), Expect = 2.961e-44
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            INP A  + VC+L CG++TG G
Sbjct:  155 INPEANHEHVCLLGCGVTTGIG 176          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.028e-44
Identity = 77/193 (39.90%), Postives = 119/193 (61.66%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + V VAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K + D+P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR I+
Sbjct:  181 YGSAVKVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSKEDIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTIL 373          

HSP 2 Score: 35.4242 bits (80), Expect = 5.028e-44
Identity = 12/22 (54.55%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+P++KVC++ CG STG+G
Sbjct:  161 IDAASPMEKVCLIGCGFSTGYG 182          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 5.028e-44
Identity = 77/193 (39.90%), Postives = 118/193 (61.14%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + VNVAK   G   A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K R  +P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR ++
Sbjct:  181 YGSAVNVAKVTPGSVCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSREGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTVL 373          

HSP 2 Score: 36.1946 bits (82), Expect = 5.028e-44
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+PL+KVC++ CG STG+G
Sbjct:  161 IDAASPLEKVCLIGCGFSTGYG 182          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 6.552e-44
Identity = 76/193 (39.38%), Postives = 119/193 (61.66%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + VNVAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR ++
Sbjct:  181 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          

HSP 2 Score: 36.1946 bits (82), Expect = 6.552e-44
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+PL+KVC++ CG STG+G
Sbjct:  161 IDAASPLEKVCLIGCGFSTGYG 182          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 6.552e-44
Identity = 76/193 (39.38%), Postives = 119/193 (61.66%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + VNVAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR ++
Sbjct:  181 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          

HSP 2 Score: 36.1946 bits (82), Expect = 6.552e-44
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+PL+KVC++ CG STG+G
Sbjct:  161 IDAASPLEKVCLIGCGFSTGYG 182          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.553e-44
Identity = 82/192 (42.71%), Postives = 114/192 (59.38%), Query Frame = -3
Query:  271 ATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIR 846
            A  N AK +   SVA+F            AR + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN AFDLM  G+SIR +IR
Sbjct:  177 AVHNTAKVQPDDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          

HSP 2 Score: 31.5722 bits (70), Expect = 6.553e-44
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            INP A  + VC+L CG++TG G
Sbjct:  155 INPEANHEHVCLLGCGVTTGIG 176          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.450e-43
Identity = 79/193 (40.93%), Postives = 118/193 (61.14%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + V VAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP DY KP+Q+V+ +MT+GGVD S E  G +  M S+    H   GV+V+VGVP    +   +PM+LL  R+ KG  FG +K +  +P +V  +M K+  +E  ITH +PF +IN+AFDL+ AG+SIR ++
Sbjct:  181 YGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPLDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 373          

HSP 2 Score: 35.8094 bits (81), Expect = 1.450e-43
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+PL+KVC++ CG STG+G
Sbjct:  161 IDGASPLEKVCLIGCGFSTGYG 182          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.450e-43
Identity = 75/193 (38.86%), Postives = 117/193 (60.62%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + A +  AK + G + A+F             + +GASRII VD+N  +F +AK+ G TE +NPKD+ KP+ +V+ +MT  GVD S E  G ++ M +A    H+ +GV+V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  ++  ITHT+PF++IN+ FDL+  G+SIR ++
Sbjct:  182 YGAVLQTAKVEAGSTCAVFGLGGVGLSVVMGCKAAGASRIIAVDINKDKFAKAKELGATECINPKDFKKPIHEVLTEMTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRSVL 374          

HSP 2 Score: 39.2762 bits (90), Expect = 1.450e-43
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = -1
Query:  831 INPAAPLDKVCVLSCGISTGFGLLLMS 911
            I+ AAPL+KVC++ CG STG+G +L +
Sbjct:  162 IDSAAPLEKVCLIGCGFSTGYGAVLQT 188          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.889e-43
Identity = 77/193 (39.90%), Postives = 118/193 (61.14%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + VNVAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR I+
Sbjct:  181 YGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          

HSP 2 Score: 36.1946 bits (82), Expect = 1.889e-43
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+PL+KVC++ CG STG+G
Sbjct:  161 IDAASPLEKVCLIGCGFSTGYG 182          
BLAST of CN187889 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 2.462e-43
Identity = 79/193 (40.93%), Postives = 117/193 (60.62%), Query Frame = -3
Query:  274 FWATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 852
            + + V VAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M SA    H   GV+V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  ++  ITH +PF +IN+AFDL+ +G+SIR ++
Sbjct:  181 YGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHAACGVSVVVGVPPNAQNLSMNPMLLLLGRTWKGAIFGGFKSKDSVPKLVADFMAKKFPLDPLITHVLPFEKINEAFDLLRSGKSIRTVL 373          

HSP 2 Score: 37.3502 bits (85), Expect = 2.462e-43
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  846 INPAAPLDKVCVLSCGISTGFG 911
            I+ A+PLDKVC++ CG STG+G
Sbjct:  161 IDGASPLDKVCLIGCGFSTGYG 182          
The following BLAST results are available for this feature:
BLAST of CN187889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FRMA_ECOLI2.961e-4443.23S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1A_MACMU5.028e-4439.90Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADH1B_PAPHA5.028e-4439.90Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH1B_PANTR6.552e-4439.38Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN6.552e-4439.38Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
FRMA_ECOSM6.553e-4442.71S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1_PERMA1.450e-4340.93Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1_CHICK1.450e-4338.86Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1A_HUMAN1.889e-4339.90Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1_MOUSE2.462e-4340.93Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187889 ID=CN187889; Name=CN187889; organism=Citrus sinensis; type=EST; length=911bp
GGGGGGGGGGGGGGGCGAGACCCCCTTAGAAAACACTCTCTTTGTACGCC
ATATGCAGCAAGTCATCAAACAGAAAAACAAAACAAAAAAAGGGACTGTA
AGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCAGCAAGTCAT
CAAACATACAGCATAAATTACTTATTCTCGGGGTAATATATAACTTGGAA
AATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATCAGCAACAGC
AGACACATCTAACCATCCATGCGAATGATGCACCTAATGCTTTCTCCCGC
AAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCACAGTGTGAG
TGATGAATTTCTCGACCTCCAACTCCTTGTTCATGTATTTTTCAACAACA
GAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAGAAGGTACCCTTAAG
AGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATGCATCATCTT
TGTTTGGCACACCCACAAGCACAGCAACACCCCAACCATCGTGAACGCAT
TCAAATGCTGAAATCATGGCCTGGACGCTTCCAGTACATTCAACACTTCT
ATCCACTCCACCATTGGTCATGTCAGCAATCACCTGTTGAACAGGTTTGT
CATAATCTTTTGGATTCACAAACTCGGTAACCCCAAACTTCTTGGCTTCA
TTGAATCTGCTTGGGTTCAAATCAACACCAATGATCCTGGAAGCCCCTGA
TACCCTTGCCCCTTCGGCAGCAGCGAGGCCAACTGCACCCAATCCAAAAA
TGGCAACAGACTGGCCCTTCTTCGGTTTGGCGACATTAACAGTAGCCCAA
AACCTGTGGAGATTCCACAGCTAAGCACACAAACTTTGTCAAGAGGGGCA
GCAGGATTGAT
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