CN187886

Overview
NameCN187886
Unique NameCN187886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3018 contig Csv1_Contig3018:587..1351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FADH_METMR (S-(hydroxymethyl)glutathione dehydrogenase OS=Methylobacter marinus GN=fdh PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 69/234 (29.49%), Postives = 98/234 (41.88%), Query Frame = 2
Query:   50 IFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTD--RGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNG-GVDRSVECTGSVQAMISAFECVHDGWGVAVLVG 742
            I GHE  G V  VG  VT L+ GD V+  FT  C  C  C     + CD    N D  R  M +     F           G + +       VG + KI    P DKV  LS    TG+ A  N A+ + G +VA++              + GA R+I +D  P R   A++ G  E ++ ++ D  V   +  MTNG G D  ++  G       +F+ V D    A+ +G
Sbjct:   57 ILGHEPMGEVVEVGSEVTSLKTGDRVVVPFTISCGHCFFCEKTLYSCCDTSNPNADMARKAMGHSPAGIFGYSHMLGGFAGGQAEYLRVPYADVGPI-KITSDLPDDKVLFLSDIFPTGYMAAEN-AQIEPGDTVAVWGCGPVAQFVIQSCWMLGAGRVIAIDRVPERLTMAQEHGKAEIIDFEEED--VYDRLMAMTNGRGPDCCIDAVGCEAHGAGSFDAVLDKAKAALYLG 286          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 68/250 (27.20%), Postives = 111/250 (44.40%), Query Frame = 2
Query:   14 WEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKI-NPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKD 757
            W  K + PL P   GHE  GIV  V +GV  ++ GD V +P     C EC +C + +  +C            +N G   +S+ G           ++EY       VAKI +   P++   +L  G++T     V+ A+P  G+ VAI+             +  G + ++ VD++  +   AK  G    +N    D PV+ +   +  GGV  ++    + +A   A++ V  G G  V+VG+PN D
Sbjct:   49 WPIKPKLPLIP---GHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLCP---------HQLNGG---YSVDG----------GYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKALKVSGARP--GEWVAIYGIGGLGHIALQYAKAMGLN-VVAVDISDEKSKLAKDLGADIAINGLKED-PVKAIHDQV--GGVHAAISVAVNKKAFEQAYQSVKRG-GTLVVVGLPNAD 266          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: YHG1_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1198.01 OS=Schizosaccharomyces pombe GN=SPBC1198.01 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 2
Query:   50 IFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKG--KPIYHFVG-TSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAK-KFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTG 673
            I GHE+ GIV   G+ V +L+ GD V+  F   C +C  C   E   CD    N  + + +N G    +I G  K +    G  + +       + C  K+    P  +   +S  + T   A   + + KKG +VAI+             ++ GAS++IG+++ P R   A+ KFG T  V  ++    V + I ++ + GVD ++E +G
Sbjct:   94 ILGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACD--TTNDSKLMDVNYGSHHSAIFGYTKLLGDVPGCQAEYIRVPFAEINC-CKLPDDIPDSEGLFMSDVLCTSLHA-CTLGEVKKGDTVAIWGMGPIGLYAGRWAQILGASKVIGIEVVPERIELARQKFGFT--VIDRNEVSDVPKKIMELVSNGVDCAIEASG 299          
The following BLAST results are available for this feature:
BLAST of CN187886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
FADH_METMR3.603e-1329.49S-(hydroxymethyl)glutathione dehydrogenase OS=Meth... [more]
ADH2_BACST2.336e-1227.20Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
YHG1_SCHPO1.977e-1127.83Zinc-type alcohol dehydrogenase-like protein C1198... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187886 ID=CN187886; Name=CN187886; organism=Citrus sinensis; type=EST; length=765bp
GACGGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCA
TTTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTA
ACTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTG
CAAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCC
TCAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGA
TTCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTT
CAGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTG
CTGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGT
TTTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGC
CATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGCCGAAGGGGCAAGGG
TATCAGGGGCTTCCAGGATCATTGGTGTTGATTTGAACCCAAGCAGATTC
AATGAAGCCAAGAAGTTTGGGGTTACCGAGTTTGTGAATCCAAAAGATTA
TGACAAACCTGTTCAACAGGTGATTGCTGACATGACCAATGGTGGAGTGG
ATAGAAGTGTTGAATGTACTGGAAGCGTCCAGGCCATGATTTCAGCATTT
GAATGCGTTCACGATGGTTGGGGTGTTGCTGTGCTTGTGGGTGTGCCAAA
CAAAGATGATGCATT
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