CN187886

Overview
NameCN187886
Unique NameCN187886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3018 contig Csv1_Contig3018:587..1351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.959e-63
Identity = 118/239 (49.37%), Postives = 160/239 (66.95%), Query Frame = 2
Query:   32 TPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVP 748
            TPL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C + ESN C    +   RG +  DG  RF+  GKPI+HFVG STFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK   G + A+F             + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ +MT+GGVD S E  G +  M+++  C H+  G +V+VGVP
Sbjct:   60 TPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVP 296          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.105e-62
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.105e-62
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.105e-62
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.105e-62
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.105e-62
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.105e-62
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.443e-62
Identity = 110/236 (46.61%), Postives = 154/236 (65.25%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.443e-62
Identity = 110/236 (46.61%), Postives = 154/236 (65.25%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
BLAST of CN187886 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.443e-62
Identity = 110/236 (46.61%), Postives = 154/236 (65.25%), Query Frame = 2
Query:   38 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGV 745
            +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F             R + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ D+   G+D + EC G+V  M +A E  H GWG +V++GV
Sbjct:   55 VFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV 289          
The following BLAST results are available for this feature:
BLAST of CN187886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
ADH1G_HUMAN4.959e-6349.37Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
FRMA_SHISS1.105e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOLI1.105e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC1.105e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS1.105e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO571.105e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.105e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOUT1.443e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL51.443e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK11.443e-6246.61S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187886 ID=CN187886; Name=CN187886; organism=Citrus sinensis; type=EST; length=765bp
GACGGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCA
TTTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTA
ACTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTG
CAAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCC
TCAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGA
TTCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTT
CAGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTG
CTGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGT
TTTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGC
CATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGCCGAAGGGGCAAGGG
TATCAGGGGCTTCCAGGATCATTGGTGTTGATTTGAACCCAAGCAGATTC
AATGAAGCCAAGAAGTTTGGGGTTACCGAGTTTGTGAATCCAAAAGATTA
TGACAAACCTGTTCAACAGGTGATTGCTGACATGACCAATGGTGGAGTGG
ATAGAAGTGTTGAATGTACTGGAAGCGTCCAGGCCATGATTTCAGCATTT
GAATGCGTTCACGATGGTTGGGGTGTTGCTGTGCTTGTGGGTGTGCCAAA
CAAAGATGATGCATT
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