CK938791

Overview
NameCK938791
Unique NameCK938791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13608 contig Csv1_Contig13608:607..1387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938791 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 47/160 (29.38%), Postives = 81/160 (50.62%), Query Frame = 3 
Query:   96 AKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLTPMVMLGRKA------ITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 557
            AKAMG HV  I+ ++ K  +++ +LGA++ ++S++  +M +   S D+I+ T+P  H + PY             G        L P V+ G         +  S I    E KEML FC E  +   +++IK D +N   ++L ++  +YR+V+D+  S
Sbjct:  267 AKAMGAHVVAITRTEWKFKDSVNNLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPYIELLKYKATICTVGE-------LFPTVINGMDLAQHPCFLQSSLIAGSDEIKEMLAFCSEHNIMPDVQIIKADKINDTRQKLLESKAKYRYVIDIRAS 419
The following BLAST results are available for this feature:
BLAST of CK938791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
YL498_MIMIV2.328e-1529.38Probable zinc-type alcohol dehydrogenase-like prot... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_D03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938791 ID=CK938791; Name=CK938791; organism=Citrus sinensis; type=EST; length=782bp
GGGTCAGTCCCCTGAGCCACTTTGGATTGAAGCAGAGCGGGCTGAGAGGA
GGAATCTTGGGGCTCGGAGGAGTAGGTCACATGGGGGTTTTGATAGCTAA
GGCGATGGGACACCATGTTACTGTGATTAGCTCTTCTGATAAGAAAAGAG
TGGAAGCTATGGAGCATCTTGGTGCCGATCAGTACCTTGTCAGCTCCGAC
GCAACTCGTATGCAAGAAGCCGCTGACTCACTTGATTATATCATTGATAC
CGTGCCCGCAAATCACCCTCTGGAGCCTTACCTTTCGCTGCTGAAGCTTG
ATGGAAAGTTGATCTTGACGGGTGTCATTAACACTCCCATGCAGTTTCTT
ACCCCTATGGTTATGCTTGGGAGAAAGGCAATCACGGGGAGCTTCATTGG
GAGCATGAAGGAGACAAAGGAAATGCTTGAATTCTGCCGAGAGAAGGGAG
TCACCTCCATGATTGAAGTGATCAAGATGGATTACGTTAACAAAGCATTC
GAGAGACTCGAAAAGAACGACGTTAGGTACAGATTCGTCGTGGACGTTGC
CGGAAGCAAACTCGATCCGTAGAGAAATTCAATTTTGGCATGATGCTCGT
TTTGTTTTTTGAGTGCCTTGTTTGGTTTTTATGCTTTCGTCGTTGGCCTA
ACCATATGTGGCTTCCGTGTTTACAATTTCTCCTAATAAGTTAAAAAAAA
AAAACAAGCTGAGGTGTTTACTGACAGTGTGTTAATTTAATCAGTATTTT
TTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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