EY665964

Overview
NameEY665964
Unique NameEY665964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  144 RISKRKTGSKSVSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSE 470
            R+SK  T   + S+ +     D  + L      PP +L G  PGD+G+D  GL++DP +   N++ E++HCRWAMLGA G   PELL + G+  + + +     + F++
Sbjct:   41 RVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTD 149          
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 49/132 (37.12%), Postives = 63/132 (47.73%), Query Frame = 3
Query:  108 LAPSSNELSNGGRISKRKTGSKSVSSGSPWYGPDRVKNLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVK-ERAQIFSEGGLDYLGNP 497
            LAPSS    +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  P  F + +E EI HCRWAML   G + PE LG          WVK +      +G   YLGNP
Sbjct:   19 LAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGN-------WVKAQEWAALPDGQATYLGNP 132          
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  243 PPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVK 446
            PP YLTGE  GD G+D AGL+ADP TF + +  E+ HCR +ML  +GC+ PELLG NG  F   +W K
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWFQ--IWDK 444          

HSP 2 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  234 SGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGR 410
            + EPP+ LTGE+P D G+D   L+ADP  +A+ R  E+ H R AML  +GC+ PELLG+
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK 251          
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  144 RISK--RKTGSKSVSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSE 470
            R+SK     GS+SV+  +    PDR   L      PP +L G  PGD+G+D  GL +DP +   N + E++H RWAMLGA G   PE L + GV  + + +     + F++
Sbjct:   41 RVSKFIAPVGSRSVAVSAVAADPDRP--LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTD 149          
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  237 GEP-PSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGG-LDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESE-PMYPWCGIYPLAPDFHQKGNARRDGLK 689
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE LG          WVK +      GG   YLG P  +   ++  I A + + +  VE  R    S+ ++SE   YP     PL    + K  A+ + LK
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN-------WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR----SMEKDSEKKKYPGGAFDPLG---YSKDPAKFEELK 189          
The following BLAST results are available for this feature:
BLAST of EY665964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_SOLLC3.283e-1334.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB121_HORVU9.552e-1337.12Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR2.128e-1254.41Light-harvesting complex I LH38 proteins (Fragment... [more]
CB12_PETHY6.191e-1236.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC1.056e-1135.71Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665964 ID=EY665964; Name=EY665964; organism=Citrus sinensis; type=EST; length=855bp
CCACGCGTCCGCACTCAAACACTAAAGCTCACCACAACTCCGATCATTGT
AAAATGGAAACCTCGACCATGGGTCTCTCCTCATCATTCCTCCGAAAGGC
TGTGAAACTTGCCCCTTCAAGCAATGAGCTGAGCAATGGCGGCCGCATCT
CCAAGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTAC
GGCCCGGACAGAGTCAAGAACTTGGGTCCATTCTCTGGCGAGCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGGC
TTTCAGCTGACCCATAAACCTTTGCCAAGAACCGTGAACTCGAAATCATC
CACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGGCCGCAACGGAGTCAAGTTCAGTGAAGCCGTGTGGGTCAAAGAGA
GGGCCCAAATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGA
CTGATCCACGCTCAGAGCATCTTGGACATCTGGGCTTGCCAGGTGGTCTT
GATGCGTACCGTTGAGGGCTAAAGAATTGCTGGATGGTCGCTCACTCAAG
AGAGTGAGCCAATGTACCCATGGTGTGGGATATATCCATTGGCGCCGGAT
TTTCACCAAAAGGGTAATGCCCGCCGCGATGGTCTGAAAGAACTAATGGG
AGCCCCCTATCCTCTCCAAGTGTGGAGTCGCGCCTAACACATTTGTCAAA
CCAGAAAAAACGCAAGAACATTTCGACGGACCCATGGACACAAACTGACA
AACAACTGACTAGACCTAGTAAACCACCCTCCACCCCCCACAGCGCGTAT
GAGAG
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