CK938786

Overview
NameCK938786
Unique NameCK938786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:334..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938786 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 42/157 (26.75%), Postives = 74/157 (47.13%), Query Frame = 1 
Query:    4 EKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 474
            E+VE E+L + +  K+            V    +V +++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   56 EQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211
[Close]
BLAST of CK938786 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 42/157 (26.75%), Postives = 72/157 (45.86%), Query Frame = 1 
Query:    4 EKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 474
            ++VE E+L + +  K+            V    +V +I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS +++ +++ + +RE
Sbjct:   56 DQVEKELLRVAQLLKEPKLAASILNP-HVKRAIKVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASALPEATLSELKTVLQSFLSKNQVLKLEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSKAMRE 211
The following BLAST results are available for this feature:
BLAST of CK938786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_PIG3.172e-1226.75ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]
ATPO_SORAR9.229e-1226.75ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_C05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938786 ID=CK938786; Name=CK938786; organism=Citrus sinensis; type=EST; length=672bp
GGGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTTGAGGCTTCAAAGAA
GGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTGTGCCTGCAGAGA
CGAGAGTTAATGCCATTAACGAAATCTGTACTCAGGCTAAATTTTCAGAT
GTTACGAAGCACTTCTTGGTTGTTTTGGCTGAGAATGGGAGGCTTAGAAA
CTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCATGGCACACAAGG
GCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTTCCCCCAGAAGAA
GAGAAAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAAGGGAAGAA
AGTCAAGGTTGAACAGAAGGTTGATCCTAGCATTCTTGGTGGGCTCGTAG
TAGAGTTTGGGCAAAAGGTGTTTGACATGTCCATTAAGTCTAGGGCGCGG
CAGATGGAGAGGTTCCTACGTGAGCCCATTCATTTTGGCACCCTCTAAAA
AGGCTGCCACAGCCCCAGGGCCCAAATTTTCAAGATGATTATGCAACAAC
TGGAACGCTCCAAGAAGTAAAAGAACCATTCATGCTTTTGTTTGGTGCTG
TTTGCTTGTGCTCCGCCATTTCTGAATGAATTGAATCATTGGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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