CN187880

Overview
NameCN187880
Unique NameCN187880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.392e-43
Identity = 92/161 (57.14%), Postives = 105/161 (65.22%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPS FG  RS+V DPF+LD+WDPF+DF  P+   SA       E SA VN RVDWKET EAHV K D+PGL             VLQISG+RN+EKEDKNDTWHRV+RSSG F RRFRLPEN K++Q+KA ME+G                K IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSA-------ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.261e-42
Identity = 88/161 (54.66%), Postives = 109/161 (67.70%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MS+IPSFFG+RRS+V +PF+LD+WDPF+D+P  +  SS  SS+F  ET+A  N  +DWKETP+AHVFK DLPGL             VLQISG+RN EKE+KN+ WHRVE SSG F RRFRLPEN  +D++KA ME+G                K+I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLIT--SSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.151e-42
Identity = 93/162 (57.41%), Postives = 107/162 (66.05%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSS-VSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIP  FG+RRSS + DPF++DV+DPFR+  FPS  S         E+SA  N R+DWKETPE HVFK DLPGL             VLQISG+RN+EKEDKND WHR+ERSSG F RRFRLPEN KMDQ+KASME+G                K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSG--------ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.809e-42
Identity = 88/144 (61.11%), Postives = 99/144 (68.75%), Query Frame = -1
Query:  147 DPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEIS 578
            DPF+LDVWDPF+DFPF +   SA  S FP E SA V+ R+DWKETPEAHVFK DLPGL             VLQISG+RN+EKEDKND WHRVERSSG F RRFRLPEN KMDQ+KA+ME+G                K+IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSA--SSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.809e-42
Identity = 87/141 (61.70%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  213 MSLIPSFFGNRR---SSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 626
            MSLIPSFFGN R   +++ DPF+LDVWDPF++  FPS  SSA++           NARVDWKET EAHVFK DLPG+             VL+ISG+R++EKE+K DTWHRVERSSG FSR+FRLPENVKMDQ+KASME+G
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIA-----------NARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENG 130          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.669e-42
Identity = 94/162 (58.02%), Postives = 106/162 (65.43%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSS-VSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIP  FG+RRSS + DPF++DV+DPFR+  FP   S         ETSA  N R+DWKETPEAHVFK DLPGL             VLQISG+RN+EKEDKND W RVERSSG F RRFRLPEN KMDQ+KASME+G                K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSG--------ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 88/161 (54.66%), Postives = 109/161 (67.70%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPS FG RR++V DPF+LDV+DPF  F  PSG ++A +     + +A  NA+VDW+ETPEAHVFK DLPGL             +LQISG+R+ E E+KND WHRVERSSG F+RRFRLPEN KM++IKASME+G                K+I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.013e-40
Identity = 87/161 (54.04%), Postives = 106/161 (65.84%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPS FG RRS+V DPF+ D+WDPF  F  PS  S+  ++    + +A  NARVDWKETPEAHVFK DLPGL             VLQISG+R+ E E+KND WHRVER+SG F RRFRLPEN KM+++KA+ME+G                K+I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPS--SALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.434e-40
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSL+PSFFG RR++V DPF+LDVWDPF  F  P      L++    + +A  NA+VDW+ETPEAHVFK D+PGL             +LQISG+R+ E E+K+DTWHRVERSSG F RRFRLPEN K++++KASME+G                K+++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPG-----LTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.958e-39
Identity = 79/138 (57.25%), Postives = 100/138 (72.46%), Query Frame = -1
Query:  213 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 626
            MS+IPSFF ++RS++ DPF+LD WDPF+           +S++   ET+A+VNAR+DWKETPEAHV K DLPG+             VLQISG+R  E+E+K+DTWHRVERSSG F RRFRLPEN KMD++KA ME+G
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGI---------ISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENG 129          
The following BLAST results are available for this feature:
BLAST of CN187880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HSP15_SOYBN7.392e-4357.1417.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA1.261e-4254.6618.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_SOLLC2.151e-4257.4117.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_MEDSA2.809e-4261.1118.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS17A_ARATH2.809e-4261.7017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP11_SOLPE3.669e-4258.0217.7 kDa class I heat shock protein OS=Solanum per... [more]
HS17C_ARATH4.056e-4154.6617.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS181_ARATH2.013e-4054.0418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP17_ARATH3.434e-4051.5517.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_HELAN4.958e-3957.2517.6 kDa class I heat shock protein OS=Helianthus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187880 ID=CN187880; Name=CN187880; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTGCAAAAACAGTCCAGTTTATTGATTACACCCAGAATACCATT
ACACTTACATTCATGCAAGCAAATTACAAAACCAAAACATCACAGCATCC
TTATACAAGTATGCATAAAGACATACAGACAGACACTGGTTTAACCAGAG
ATTTCGATAGCCTTAACATCAGGTTTGGTCACCTCCACTTTCGGAACAGT
AACAGTGAGCACACCACTCTCCATGGAAGCCTTAATCTGATCCATCTTCA
CATTCTCAGGCAACCTGAACCTCCTCGAGAACATGCCACTGCTGCGCTCA
ACGCGATGCCACGTGTCGTTCTTGTCTTCCTTCTCAATATTCCTCTGACC
GCTTATCTGAAGCACCCTGTCGTCTTCGACCTCGACCTTCACTTCCTCTT
TCCTGAGCCCCGGAAGATCGGTCTTGAACACGTGGGCTTCCGGGGTTTCC
TTCCAGTCCACGCGGGCATTAACGACAGCAGAGGTTTCTGGAGGGAACTG
AGAGGACAGCGCAGACGAATAACCGGAAGGGAAAGGGAAGTCCCTGAATG
GATCCCAAACGTCGAGTGCAAATGGATCAGAGACACTGCTGCGTCGGTTT
CCGAAGAAGCTTGGAATCAACGACATCGTTTCTCAATAGAGTGATACGGC
TTTCCTCGA
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