CN187871

Overview
NameCN187871
Unique NameCN187871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_CYNDA (Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.396e-53
Identity = 96/131 (73.28%), Postives = 110/131 (83.97%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMC+I+GHHLTSAAI+GHDG+VWAQS+ FP FKPEE+A IMKDF+EPG LAPTGL LG TKYMVIQGEPGAVIR             GQAL+ GIYDEP+TPGQCNM++E+LGDYLI+QG+
Sbjct:    1 MSWQAYVDDHLMCEIEGHHLTSAAIIGHDGTVWAQSAAFPAFKPEEMANIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGVTVKKTGQALVIGIYDEPMTPGQCNMVIEKLGDYLIEQGM 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF2_PHLPR (Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.353e-53
Identity = 94/131 (71.76%), Postives = 110/131 (83.97%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVD+HLMC+I+GHHL SAAI+GHDG+VWAQS++FPQFKPEEI  IMKDF+EPG LAPTG+ + G KYMVIQGEPGAVIR             GQAL+ GIYDEP+TPGQCNM+VERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_CAPAN (Profilin OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.091e-52
Identity = 99/131 (75.57%), Postives = 108/131 (82.44%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMC+I+G+ LTSAAI+G DGSVWAQS+ FPQFKPEEI AIM DF EPG+LAPTGL+LGGTKYMVIQGE GAVIR              QALI GIYDEP+TPGQCNMIVERLGDYLI+Q L
Sbjct:    1 MSWQTYVDDHLMCEIEGNRLTSAAIIGQDGSVWAQSATFPQFKPEEITAIMNDFAEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGPGGITVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_ANACO (Profilin OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.091e-52
Identity = 95/130 (73.08%), Postives = 107/130 (82.31%), Query Frame = -2
Query:  296 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 685
            MSWQ YVDDHLMC+IDG HL+SAAI+GHD +VWAQS NFPQFKPEEI+AI+ DFE PGSLAPTGL+LGGTKYMVIQGEPG VIR               ALI G+YDEP+TPGQCNM+VERLGDYL++QG
Sbjct:    1 MSWQAYVDDHLMCEIDGQHLSSAAILGHDSTVWAQSPNFPQFKPEEISAILNDFENPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGTGGITVKKTNLALIIGVYDEPMTPGQCNMVVERLGDYLLEQG 130          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_PRUDU (Profilin OS=Prunus dulcis PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.425e-52
Identity = 99/131 (75.57%), Postives = 109/131 (83.21%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMCDIDG+ LT+AAI+G DGSVW+QS+ FP FKPEEIAAI+KDF++PG+LAPTGL LGGTKYMVIQGE GAVIR              QALI GIYDEPLTPGQCNMIVERLGDYLI+QGL
Sbjct:    1 MSWQQYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSATFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGITVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF3_MALDO (Profilin-3 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.425e-52
Identity = 96/131 (73.28%), Postives = 111/131 (84.73%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMCDIDG+ LT+AAI+G DGSVW+QS++FP FKPEEIAAI+KDF++PG+LAPTGL LGGTKYMVIQGEPGAVIR              QAL+ GIYDEP+TPGQCN++VERLGDYLI+QGL
Sbjct:    1 MSWQAYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSASFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTSQALLIGIYDEPVTPGQCNIVVERLGDYLIEQGL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.425e-52
Identity = 98/130 (75.38%), Postives = 107/130 (82.31%), Query Frame = -2
Query:  296 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 685
            MSWQ YVDDHL+C I+G+HLT AAI+G DGSVW QS++FPQFKPEEI AIM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIR             G ALI GIYDEP+TPGQCNM+VERLGDYLIDQG
Sbjct:    1 MSWQAYVDDHLLCGIEGNHLTHAAIIGQDGSVWLQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLIDQG 130          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.861e-52
Identity = 94/131 (71.76%), Postives = 108/131 (82.44%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMC+I+G+HL++AAI+GHDGSVWAQS+ FPQ KPEE+  I+ DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIR               AL+ GIYDEP+TPGQCNMIVERLGDYL++QGL
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGSVWAQSATFPQLKPEEVTGILNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.861e-52
Identity = 96/131 (73.28%), Postives = 109/131 (83.21%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVD+HLMC+I+G+HLTSAAI+G DGSVWAQS NFPQ KPEE+A I+ DF +PG+LAPTGL++GGTKYMVIQGEPGAVIR             G AL+ GIYDEP+TPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQVYVDEHLMCEIEGNHLTSAAIIGQDGSVWAQSQNFPQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGATVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_BETVE (Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.861e-52
Identity = 101/133 (75.94%), Postives = 109/133 (81.95%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTS--AAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVD+HLMCDIDG    S  +AIVGHDGSVWAQSS+FPQFKP+EI  IMKDFEEPG LAPTGLHLGG KYMVIQGE GAVIR             GQAL+FGIY+EP+TPGQCNM+VERLGDYLIDQGL
Sbjct:    1 MSWQTYVDEHLMCDIDGQASNSLASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133          
The following BLAST results are available for this feature:
BLAST of CN187871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PROF_CYNDA6.396e-5373.28Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1[more]
PROF2_PHLPR8.353e-5371.76Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1[more]
PROF_CAPAN1.091e-5275.57Profilin OS=Capsicum annuum PE=1 SV=1[more]
PROF_ANACO1.091e-5273.08Profilin OS=Ananas comosus PE=1 SV=1[more]
PROF_PRUDU1.425e-5275.57Profilin OS=Prunus dulcis PE=1 SV=1[more]
PROF3_MALDO1.425e-5273.28Profilin-3 OS=Malus domestica PE=1 SV=1[more]
PROF2_SOYBN1.425e-5275.38Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]
PROF_PRUPE1.861e-5271.76Profilin OS=Prunus persica PE=1 SV=1[more]
PROF_CUCME1.861e-5273.28Profilin OS=Cucumis melo PE=1 SV=1[more]
PROF_BETVE1.861e-5275.94Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187871 ID=CN187871; Name=CN187871; organism=Citrus sinensis; type=EST; length=791bp
CCATATCATATTATCAGAGTATCAACAGTATCCAAAGATTCAAATTCTTC
AAAACTGCAATACACATAAATTAAGGAAACATGAAGGAATTGGGGATGAA
AAAAAAAAGATAAAAAAGGAACCCTAAAGAACCAAAAGAGGCGGGAAAAA
AAAATCACTCTTGTCCTCACACAGTTATTTTTGCAGCAAACAAATTTATA
CTGCCAGTTCAAGACCAAATATGGAAGAAGAGGCAAAGCCCGAAAACCAG
AAAGCAATATATCGAAACCATTTGAAGTTGACATGGGATCTACAGGCCCT
GATCAATGAGATAATCCCCCAACCTCTCAACGATCATGTTGCACTGTCCT
GGAGTCAATGGTTCATCGTATATACCAAAAATCAGGGCTTGGCCCGTTTT
CTTGACGGTGACACCACCAGAACCCTTTTTTCCACGAATCACAGCTCCAG
GCTCACCCTGGATTACCATGTACTTGGTGCCTCCAAGGTGCAAACCAGTT
GGGGCAAGAGAACCGGGCTCTTCAAAATCTTTCATGATTGCAGCAATCTC
TTCAGGCTTGAACTGAGGGAAATTGGAGCTCTGGGCCCAAACGCTGCCGT
CGTGACCGACGATCGCAGCTGAGGTGAGATGATGGCCGTCGATATCGCAC
ATCAGATGATCATCAACGTATGTTTGCCACGACATTTTCAACAATCTAAA
TTCTCACGGCAAATTCAATTGTTTGTTTAATTCCTATGTTAATTCCTTCC
CCATACAGACACAGGAAAAAGAATCTCTCTCAGCTTCCTTC
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