CN187871

Overview
NameCN187871
Unique NameCN187871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF2_TOBAC (Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.619e-50
Identity = 94/133 (70.68%), Postives = 108/133 (81.20%), Query Frame = -2
Query:  296 MSWQTYVDDHLMCDIDG---HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 685
            MSWQTYVDDHLM DI+G   +HL +AAI+G+DGSVWAQS+ FP+FKPEEI  IMKDF+EPG LAPTGL LGG KYMVIQGEPGAVIR              QALIFGIY+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:    1 MSWQTYVDDHLMADIEGQQGNHLAAAAILGNDGSVWAQSTTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIGDYLVDQG 133          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_BRANA (Profilin OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.926e-49
Identity = 94/134 (70.15%), Postives = 106/134 (79.10%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVD+HLMCD+    GHHL +AAI GHDGSVWAQS+NFPQFK +E A IMKDF+EPG LAPTGL L G KYMVIQGEPGAVIR             GQ+ +FGIY+EP+TPGQCNM+VERLGDYLI+Q L
Sbjct:    1 MSWQTYVDEHLMCDVGDGQGHHLAAAAIFGHDGSVWAQSANFPQFKGQEFANIMKDFDEPGHLAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLIEQDL 134          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF3_TOBAC (Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.318e-49
Identity = 92/132 (69.70%), Postives = 105/132 (79.55%), Query Frame = -2
Query:  296 MSWQTYVDDHLMCDIDGH--HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQG 685
            MSWQTYVDDHLM D +G   HL +AAI+GHDGSVWAQS +FP+FKPEEI  IMKDF+EPG LAPTGL L G KYMVIQGEPGAVIR              QALIFG+Y+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:    1 MSWQTYVDDHLMVDFEGQGQHLAAAAILGHDGSVWAQSPHFPKFKPEEITNIMKDFDEPGFLAPTGLFLAGIKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGLYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF3_AMBAR (Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.630e-48
Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVD+HLMCDI+G  HHLTSAAI+GHDG+VWAQSSNFPQFKPEE+  I+ +F++ G+LAPTG+ + G KYMV+QGE GAVIR             GQAL+ GIYDEP+ PGQCNM+VERLGDYLIDQG+
Sbjct:    1 MSWQAYVDEHLMCDIEGTGHHLTSAAILGHDGTVWAQSSNFPQFKPEEMKGIITEFDQAGTLAPTGMFIAGAKYMVLQGEQGAVIRGKKGAGGICIKKTGQALVMGIYDEPVAPGQCNMVVERLGDYLIDQGM 133          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF1_PARJU (Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.129e-48
Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDI-DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMCD+ DG+   SAAI+GHDGSVWAQS+NFPQ KPEE+  IM DF E G LAPTGL LGGTKYMVIQGE GAVIR             GQA++ GIYDEP+TPGQCN++VERLGDYL++QGL
Sbjct:    1 MSWQAYVDDHLMCDVGDGNTPASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEAGFLAPTGLFLGGTKYMVIQGESGAVIRGKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGL 132          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF1_ARATH (Profilin-1 OS=Arabidopsis thaliana GN=PRO1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.632e-48
Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG LAPTGL LGG KYMVIQGE GAVIR              QAL+FG YDEP+T GQCN++VERLGDYLI+  L
Sbjct:    1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF2_ARATH (Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.743e-48
Identity = 91/131 (69.47%), Postives = 102/131 (77.86%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ+YVDDHLMC+++G+HLT AAI G DGSVWAQSS FPQ KP EIA I KDFEE G LAPTGL LGG KYMV+QGE GAVIR              QAL+FGIYDEP+T GQCN++VERLGDYLI+ GL
Sbjct:    1 MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHLAPTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESGL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 6.195e-48
Identity = 92/133 (69.17%), Postives = 106/133 (79.70%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCDI+G   HLTSAAI G DG+VWA+S++FP+FKP EI AI+K+F E G LAPTGL LGG KYMVIQGE GAVIR             GQA++FGIYDEP+ PGQCNM+VERLGDYL+DQG+
Sbjct:    1 MSWQTYVDDHLMCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQGM 133          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF5_ARATH (Profilin-5 OS=Arabidopsis thaliana GN=PRO5 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.091e-48
Identity = 90/131 (68.70%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCD+ G+ LT+AAI+G DGSVWAQS+NFPQ KPEEI  I  DF  PG+LAPTGL LGG KYMVIQGEP AVIR               AL+FGIYDEP+TPGQCNM+VE LG+YLI+ GL
Sbjct:    1 MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTLAPTGLFLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESGL 131          
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF2_PARJU (Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.849e-47
Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = -2
Query:  293 MSWQTYVDDHLMCDI-DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMCD+ DG+ L SAAI+GHDGSVWAQS+NFPQ KPEE+  IM DF E G LAPTGL LGGTKYMVIQGE GAVI              GQA++ GIYDEP+TPGQCN++VERLGDYL++QG+
Sbjct:    1 MSWQAYVDDHLMCDVGDGNTLASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEGGFLAPTGLFLGGTKYMVIQGESGAVI-GKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGM 131          
The following BLAST results are available for this feature:
BLAST of CN187871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PROF2_TOBAC6.619e-5070.68Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1[more]
PROF_BRANA1.926e-4970.15Profilin OS=Brassica napus PE=2 SV=1[more]
PROF3_TOBAC7.318e-4969.70Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1[more]
PROF3_AMBAR1.630e-4867.67Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 ... [more]
PROF1_PARJU2.129e-4869.70Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1[more]
PROF1_ARATH3.632e-4868.70Profilin-1 OS=Arabidopsis thaliana GN=PRO1 PE=1 SV... [more]
PROF2_ARATH4.743e-4869.47Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV... [more]
PROF1_ARTVU6.195e-4869.17Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF5_ARATH8.091e-4868.70Profilin-5 OS=Arabidopsis thaliana GN=PRO5 PE=2 SV... [more]
PROF2_PARJU6.849e-4768.94Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187871 ID=CN187871; Name=CN187871; organism=Citrus sinensis; type=EST; length=791bp
CCATATCATATTATCAGAGTATCAACAGTATCCAAAGATTCAAATTCTTC
AAAACTGCAATACACATAAATTAAGGAAACATGAAGGAATTGGGGATGAA
AAAAAAAAGATAAAAAAGGAACCCTAAAGAACCAAAAGAGGCGGGAAAAA
AAAATCACTCTTGTCCTCACACAGTTATTTTTGCAGCAAACAAATTTATA
CTGCCAGTTCAAGACCAAATATGGAAGAAGAGGCAAAGCCCGAAAACCAG
AAAGCAATATATCGAAACCATTTGAAGTTGACATGGGATCTACAGGCCCT
GATCAATGAGATAATCCCCCAACCTCTCAACGATCATGTTGCACTGTCCT
GGAGTCAATGGTTCATCGTATATACCAAAAATCAGGGCTTGGCCCGTTTT
CTTGACGGTGACACCACCAGAACCCTTTTTTCCACGAATCACAGCTCCAG
GCTCACCCTGGATTACCATGTACTTGGTGCCTCCAAGGTGCAAACCAGTT
GGGGCAAGAGAACCGGGCTCTTCAAAATCTTTCATGATTGCAGCAATCTC
TTCAGGCTTGAACTGAGGGAAATTGGAGCTCTGGGCCCAAACGCTGCCGT
CGTGACCGACGATCGCAGCTGAGGTGAGATGATGGCCGTCGATATCGCAC
ATCAGATGATCATCAACGTATGTTTGCCACGACATTTTCAACAATCTAAA
TTCTCACGGCAAATTCAATTGTTTGTTTAATTCCTATGTTAATTCCTTCC
CCATACAGACACAGGAAAAAGAATCTCTCTCAGCTTCCTTC
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