CK938771

Overview
NameCK938771
Unique NameCK938771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   78 MAPKQP-NTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 386
            MA + P  TGL VGLNKGH  T + + PR S  KG  SKR  FV+ +++EVAG APYERR+ ELL+  KDKRA K+AK++LGT  RAK+K +E+   + + R A
Sbjct:    1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESRRA 104          
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36_CANAL (60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 47/94 (50.00%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   99 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 380
            +G+  G+NKG   T KE+ P+ S RKG +S+R  FV+++++EVAG APYERR+ EL++   +KRA K+AK++LGTHKRA +K EEM+  + + R
Sbjct:    4 SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97          
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36_DROME (60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  105 LFVGLNKGHVVTKKELPPRPSDRKGK----------TSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 386
            L +GLNKGH  +K        D+K K           ++   F+++L+REV G APYE+R  ELLKV KDKRALK  KR+LGTH RAK+KREE+SN L ++R A
Sbjct:    7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKA 110          
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36X_HUMAN (Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  105 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 368
            + VGLNKGH +TK    PR S   G+ +K    V+ +I+EV GF PYER   ELLKV KDK+ALK  K+++GTH   K+KREE+SN L
Sbjct:    7 MVVGLNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHTKRKREELSNVL 94          
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36B_YEAST (60S ribosomal protein L36-B OS=Saccharomyces cerevisiae GN=RPL36B PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 3
Query:   99 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 380
            TG+ +GLNKG  VT+    P+ S +KG  S R  FV++L+RE+AG +PYERR+ +L++   +KRA KVAK++LG+  RAK K EEM+N +   R
Sbjct:    5 TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36A_YEAST (60S ribosomal protein L36-A OS=Saccharomyces cerevisiae GN=RPL36A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 3
Query:   99 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 380
            TG+ +GLNKG  VT     P+ S +KG  S R  FV++L+RE+AG +PYERR+ +L++   +KRA KVAK++LG+  RAK K EEM+N +   R
Sbjct:    5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CK938771 vs. ExPASy Swiss-Prot
Match: RL36_DICDI (60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   99 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 374
            +G+  G NKGH V K+ +    + +K   +KRV  ++++IRE++GF+PYERR++ELLK G DKRALKVAK++LG+ +  KKKR++++N  RK
Sbjct:   12 SGIIKGFNKGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRDDIANINRK 101          
The following BLAST results are available for this feature:
BLAST of CK938771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_TRIHM2.036e-2252.8860S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_CANAL1.117e-2050.0060S ribosomal protein L36 OS=Candida albicans GN=R... [more]
RL36_DROME1.235e-1950.0060S ribosomal protein L36 OS=Drosophila melanogast... [more]
RL36X_HUMAN4.693e-1953.41Putative 60S ribosomal protein L36-like 1 OS=Homo ... [more]
RL36B_YEAST6.130e-1948.9460S ribosomal protein L36-B OS=Saccharomyces cerev... [more]
RL36A_YEAST8.005e-1948.9460S ribosomal protein L36-A OS=Saccharomyces cerev... [more]
RL36_DICDI1.783e-1848.9160S ribosomal protein L36 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004438_E10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938771 ID=CK938771; Name=CK938771; organism=Citrus sinensis; type=EST; length=684bp
GGGGGTTCTAAACAGCCTCCATTATAGAAGAAGTTATATATTCCCGGAAG
ATTGTAGTAGGAGCTGTTTGGTAGGTGATGGCTCCAAAGCAGCCAAATAC
TGGCCTTTTTGTGGGTCTAAACAAAGGACATGTCGTGACCAAGAAGGAGT
TGCCTCCCCGCCCTTCTGATAGAAAAGGCAAAACTAGTAAGAGAGTCCAT
TTTGTGAAGAACCTCATTAGGGAGGTTGCTGGTTTTGCTCCCTATGAAAG
GAGGATTACTGAACTTCTTAAAGTTGGGAAAGATAAGCGTGCTTTGAAGG
TGGCAAAGAGAAAGTTGGGCACTCACAAGAGAGCCAAGAAGAAGCGCGAG
GAAATGTCCAATGCTCTACGCAAGATGAGGTCGGCTGGAGGTGCAGAGAA
GAAGAAGTGAAGCCTCATTCAAGGTTTCTTTTAGATTCATCAGTGAAAGA
ATTTTATTTAGCTTTTGTTCTTCTAATATTGGAATTTTGGTTAGAGTTTT
AGACTTGCTTTGAAATGTTAACTGTACTTTGTTTCCAATGAGAGAGTTCA
GTTTTGTTTCCTTTGTCTGTGAAATTTGAGTATCATGTTACTCACAGTTG
CCAGTTTTTTAATCATCGATAAGAATTGATTATCCATTCACGCATTATAG
TTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top