CN187870

Overview
NameCN187870
Unique NameCN187870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 39/105 (37.14%), Postives = 68/105 (64.76%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A +++I+K+ +PA+ ++A+DA++ + EC  EFI+ ++SE+++ C RE ++TI  + +L A+  LGF +YIE +   Y Q   E   DS    K S+G
Sbjct:   31 EQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL-KVYLQKYREMEGDSKLTAKSSDG 134          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 39/108 (36.11%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  323 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 646
            G  ++D  LP A +++I+K+ +PA+ ++A+DA++ + EC  EFI+ ++SE+++ C RE ++TI  + +L A+  LGF +YIE +   Y Q   E   DS    K  +G
Sbjct:   35 GVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL-KVYLQKYREMEGDSKLTAKAGDG 141          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 36/104 (34.62%), Postives = 66/104 (63.46%), Query Frame = -1
Query:  326 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSN 637
            ++D  LP A + +I+K  +P+  ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++S+KG K  N
Sbjct:   55 EQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KQYLQKYRESMKGEKGIN 153          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 38/102 (37.25%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  338 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVYAAYEQHKLETMQDSLKGG 637
            ++D  LP A +++I+K  LPA+ ++A+DA++++ EC  EFI+ V+SE+++ C RE ++TI  + +L A+  LGF +Y+E  +VY    +      + S KGG
Sbjct:   30 EQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGG 131          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++++KG K   G
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGG 153          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++++KG K   G
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGG 153          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_HUMAN (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++++KG K   G
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGG 153          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_HORSE (Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++++KG K   G
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGG 153          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_CHICK (Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++++KG K   G
Sbjct:   52 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGG 151          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_BOVIN (Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  323 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 637
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +     +  L+  ++++KG K   G
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGG 153          
The following BLAST results are available for this feature:
BLAST of CN187870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NFYB_MAIZE7.454e-1337.14Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ9.735e-1336.11Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB_PETMA1.271e-1234.62Nuclear transcription factor Y subunit beta OS=Pet... [more]
NFYB8_ARATH1.271e-1237.25Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB_RAT8.241e-1233.33Nuclear transcription factor Y subunit beta OS=Rat... [more]
NFYB_MOUSE8.241e-1233.33Nuclear transcription factor Y subunit beta OS=Mus... [more]
NFYB_HUMAN8.241e-1233.33Nuclear transcription factor Y subunit beta OS=Hom... [more]
NFYB_HORSE8.241e-1233.33Nuclear transcription factor Y subunit beta OS=Equ... [more]
NFYB_CHICK8.241e-1233.33Nuclear transcription factor Y subunit beta OS=Gal... [more]
NFYB_BOVIN8.241e-1233.33Nuclear transcription factor Y subunit beta OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187870 ID=CN187870; Name=CN187870; organism=Citrus sinensis; type=EST; length=733bp
GAGGCAAAGCTCACTAATTACATTAAGTTATAGACAATGATCCATAAGAT
AAAGTACAAATGGAAGTGCATATCCACATAGGCTACTGCACTCACAAAGG
CTTTTTGTACATAATATAAGAGACTAAAGGCAGAACAGAAAGAGTCAAGG
ATGCTTGCCTATGGCTGGAGAAAATTAAAAGTCCTATAGTTAGTTAGCTC
TCTAAACTTGGGTTAATGTCCGGTTGCTTGGGAGGGCCAGCGGCTCCACC
GTTCATTCGTGCACGTGCCTCAGCAAACATTCTCTGCTGCTCAGCCGCTG
CTTCTTCCTCCGTCATCTCGGCCCCATTGCTCCATTTGCCACCTTTCAAC
GAGTCCTGCATAGTCTCAAGCTTGTGTTGCTCGTATGCAGCATAGACCTC
CTCGATGTACTCACCAAACCCAAGAACCTCCAAAGCCTTGAGTACATGCT
CGGGAGCAATTGTTCTTTTATCCTCCCTGCTGCAAACTTCATTGGACTCA
GAGGAAACAAGATTTATAAACTCTACACAACACTCAATCAAAAGATCTTG
AGCATCTCTTGCAACACGTACATCTGCTGGCAACATCTCTTTTATAATTT
TAGTCATTGTAGCTTTTGGGAGCGATGCGTCCTCCTTTGACTTTCCAACA
ATATCCATCGGCTCCATCTTTAATCGAGTCACCGAACCGAGTCGAACAGA
GAAACGAGAGAATCAACTAAGGATGCAGAAAAC
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