CN187870

Overview
NameCN187870
Unique NameCN187870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 29/89 (32.58%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  371 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 637
            ++D  LP A +++I+K+ LPA+ ++++DA++ + EC  EFI+ ++ E+++ C RE ++TI  + +L A+  LGF +Y+E +    ++++
Sbjct:   21 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYR 109          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 38/105 (36.19%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  329 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVYAAYEQHKLETMQDSLKGGKWS 637
            ++D  LP A +++I+K  LP + ++A+DA++ + EC  EFI+ V+SE+++ C RE ++TI  + +L A+  LGF +YI+  +VY    +      + S KGG+ S
Sbjct:   29 EQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESS 133          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  401 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 637
            ++D  +P A + +I++ +LPA  +++ D+++ + EC  E+I+ ++ E+NE C RE ++TI  E VL A+  LGF +YIE
Sbjct:   58 EQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIE 136          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 35/106 (33.02%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  326 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVYAAYEQHKLETMQDSLKGGKWSN 637
            ++D  LP A +++I+K+ LP + ++ +DA+D + EC  EFI+ ++SE+++ C +E ++T+  + +L A+  LGF +Y+E  ++Y A  +      + S K G  SN
Sbjct:   21 EQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSN 126          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 29/79 (36.71%), Postives = 57/79 (72.15%), Query Frame = -1
Query:  401 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 637
            ++D  LP A +++I+K+ LPA+ ++++DA++ + EC  EFI+ V+ E+++ C +E ++TI  + +L A+  LGF +Y+E
Sbjct:   27 EQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVE 105          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 30/82 (36.59%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  401 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 646
            G  ++D  LP A + +I+K+ LP + +VA+DA++ + +C  EFI+ ++SE+++ C +E ++TI  E ++ A+  LGF  Y+E
Sbjct:   45 GDREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVE 126          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 32/102 (31.37%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  335 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK-LETMQDSLKGGK 637
            ++D  +P A + +I+++ LP+  +++ DA++ + EC  E+I+ V+ E+NE C RE ++TI  E +L A+  LGF  Y++ +     +++ +ET + S   G+
Sbjct:   29 EQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGE 130          
BLAST of CN187870 vs. ExPASy Swiss-Prot
Match: NFYB1_ORYSJ (Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp. japonica GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  389 DIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYA 655
            D VG S  +A LP A + ++IK++LP   ++   A+ L  +C VEF+  V  E++E    E +RT+APE  L +   LGF  Y++ + A
Sbjct:   23 DGVGGSATNAELPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDA 111          
The following BLAST results are available for this feature:
BLAST of CN187870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NFYB3_ARATH8.241e-1232.58Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYBA_ARATH1.076e-1136.19Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB6_ARATH1.076e-1137.97Nuclear transcription factor Y subunit B-6 OS=Arab... [more]
NFYB1_ARATH1.406e-1133.02Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ARATH1.836e-1136.71Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB_DICDI3.132e-1136.59Nuclear transcription factor Y subunit beta OS=Dic... [more]
NFYB9_ARATH3.132e-1131.37Nuclear transcription factor Y subunit B-9 OS=Arab... [more]
NFYB1_ORYSJ6.977e-1137.08Nuclear transcription factor Y subunit B-1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187870 ID=CN187870; Name=CN187870; organism=Citrus sinensis; type=EST; length=733bp
GAGGCAAAGCTCACTAATTACATTAAGTTATAGACAATGATCCATAAGAT
AAAGTACAAATGGAAGTGCATATCCACATAGGCTACTGCACTCACAAAGG
CTTTTTGTACATAATATAAGAGACTAAAGGCAGAACAGAAAGAGTCAAGG
ATGCTTGCCTATGGCTGGAGAAAATTAAAAGTCCTATAGTTAGTTAGCTC
TCTAAACTTGGGTTAATGTCCGGTTGCTTGGGAGGGCCAGCGGCTCCACC
GTTCATTCGTGCACGTGCCTCAGCAAACATTCTCTGCTGCTCAGCCGCTG
CTTCTTCCTCCGTCATCTCGGCCCCATTGCTCCATTTGCCACCTTTCAAC
GAGTCCTGCATAGTCTCAAGCTTGTGTTGCTCGTATGCAGCATAGACCTC
CTCGATGTACTCACCAAACCCAAGAACCTCCAAAGCCTTGAGTACATGCT
CGGGAGCAATTGTTCTTTTATCCTCCCTGCTGCAAACTTCATTGGACTCA
GAGGAAACAAGATTTATAAACTCTACACAACACTCAATCAAAAGATCTTG
AGCATCTCTTGCAACACGTACATCTGCTGGCAACATCTCTTTTATAATTT
TAGTCATTGTAGCTTTTGGGAGCGATGCGTCCTCCTTTGACTTTCCAACA
ATATCCATCGGCTCCATCTTTAATCGAGTCACCGAACCGAGTCGAACAGA
GAAACGAGAGAATCAACTAAGGATGCAGAAAAC
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