CN187869

Overview
NameCN187869
Unique NameCN187869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:1614..2463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 7.993e-105
Identity = 184/190 (96.84%), Postives = 187/190 (98.42%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFT+MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMASTFVGNSTSIQEMFRRVSEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 7.993e-105
Identity = 185/190 (97.37%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ Y  LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRPLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 7.993e-105
Identity = 184/190 (96.84%), Postives = 188/190 (98.95%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPP G+KMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  231 SATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 420
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.044e-104
Identity = 185/190 (97.37%), Postives = 187/190 (98.42%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.044e-104
Identity = 185/190 (97.37%), Postives = 187/190 (98.42%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  221 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 410
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.044e-104
Identity = 184/190 (96.84%), Postives = 188/190 (98.95%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +L+VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRTLSVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 1.363e-104
Identity = 183/190 (96.32%), Postives = 188/190 (98.95%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKM+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.781e-104
Identity = 185/190 (97.37%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ Y SLTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 3.037e-104
Identity = 182/190 (95.79%), Postives = 187/190 (98.42%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 3.967e-104
Identity = 182/190 (95.79%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ Y +LTVPELTQQMWDAKNMMCAADPRHGRYLTASA FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCD+PPRGLKMA TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPPRGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBB2_WHEAT7.993e-10596.84Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2... [more]
TBB1_WHEAT7.993e-10597.37Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_ARATH7.993e-10596.84Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB6_ARATH1.044e-10497.37Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_PEA1.044e-10497.37Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB1_PEA1.044e-10496.84Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB7_MAIZE1.363e-10496.32Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB5_WHEAT1.781e-10497.37Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB3_WHEAT3.037e-10495.79Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB4_WHEAT3.967e-10495.79Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bp
GGGCGGGCGTGCCCCCCTTTTTTTGATCAACTAACAATTCTTTATTCAAA
TGCTCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAA
ACAACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTT
CTTTTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGT
TCTCGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCC
TGATATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTC
AGTGAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGG
CCTTACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATC
TCTTGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACC
ACGTGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACT
CCACAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCC
ACCTCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTA
GCGCCCATGGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACA
TTTGCTGGGTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCC
CGTGAGGTGAGTGGTGCAAATCCCACCATGAAGAAATGAAGACGTGGGAA
TGGGATCAGATTAACAGCCAGCTTCCTGAGGTCAGAGTTGAGTTGCCCAG
GGAACCTCAGGCAGCAAGTGACACCACTCATAGTTGCAGAAAA
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