CN187869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.179e-31 Identity = 66/191 (34.55%), Postives = 108/191 (56.54%), Query Frame = -1 Query: 283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831 +S VT LRF G LN DL + NL+P+PR+HF + +A + S + L+VPE+T ++ N M DPR G+Y+ ++RG + K+V+ + ++ + S FV+W P K + PP ++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 110 VSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.179e-31 Identity = 66/194 (34.02%), Postives = 107/194 (55.15%), Query Frame = -1 Query: 283 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 840 S +S +T LRF G LN DL + NL+PFPR+HF +V +AP+ S + L+V E+T ++ N M DP+ G+Y+ ++RG + K+V+ + ++ S FV+W P K + PP ++ A + N+T+I E + R+ +F M+ ++AF+HWY EGM+E EF EA ++ Sbjct: 229 SQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDL 422
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31 Identity = 63/191 (32.98%), Postives = 105/191 (54.97%), Query Frame = -1 Query: 283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831 +S +T LRF G LN DL + NL+P+PR+HF +V ++P+ S + + +V E+T ++ N M DPRHG+Y+ ++RG + + + ++ K + FV+W P K +C P + A + N+T+I E + +S +F M ++AF+HWY GEGM+E EF+EA ++ Sbjct: 235 VSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDL 425
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31 Identity = 66/199 (33.17%), Postives = 109/199 (54.77%), Query Frame = -1 Query: 274 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 831 +S +T LRF G LN DL + NL+PFPR+H+ ++ +AP+ S + S ELT Q ++ N M DPR+G+Y+ + ++RG + ++ + ++ K+S VEW P K + P + AS + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L Sbjct: 236 VSSITSSLRFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASL 434
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31 Identity = 66/188 (35.11%), Postives = 108/188 (57.45%), Query Frame = -1 Query: 307 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 831 +S +T LRFPG LN D+ + NL+PFPRLHF + +AP+ S+ ++ ++TV +T ++ N+M P G+Y+ M+RG + KE + + N++N+ S FV+W P K + + P G MA T + N+T+I ++F R++ +F M+ ++AF+HWY GEGM+E E Sbjct: 144 ISSLTSSLRFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.429e-31 Identity = 68/195 (34.87%), Postives = 110/195 (56.41%), Query Frame = -1 Query: 283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD-----IP-------PRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831 +S +T LRF G LN DL + NL+PFPR+HF + +APL S +Q+ +V E+T +++ N M D + G+Y+ ++RG + K+ + +++ K + FV+W P K VC+ +P PR L M S N+T+I + R+ +F M+R++AF+HWY GE M+E EF+EA ++ Sbjct: 233 VSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLS----NTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDL 423
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 4.478e-31 Identity = 66/191 (34.55%), Postives = 108/191 (56.54%), Query Frame = -1 Query: 283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831 +S +T LRF G LN DL + NL+P+PR+HF M FAP+ S + +V ++T +++ N + DPR G+Y+ ++RG + KEV+ + ++++S FV+W P K + + PP G +A + N+T+I E + R+ +F M+ ++AFLHWY EGM+E EF EA ++ Sbjct: 242 VSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDL 432
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 9.977e-31 Identity = 65/191 (34.03%), Postives = 109/191 (57.07%), Query Frame = -1 Query: 283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831 +S +T LRF G LN DL + NL+PFPR+H+ ++ +AP+ S + S V +LT Q + N M DPR+G+Y+ + ++RG ++ + + +++ K S VEW P K + P G ++A + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 237 VSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 427
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30 Identity = 70/195 (35.90%), Postives = 115/195 (58.97%), Query Frame = -1 Query: 274 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 831 MS +T LRF G LN DL + NL+PFPR HF M+ +AP+ + +L+V ELT ++D ++M D G++++ M+RG +S++EV+ + ++ +N+ FV W P + K + P G AST I N T++ ++F++V++ F MF ++AF+H Y GEGM+E EFT+A ++ +L Sbjct: 240 MSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYEL 434
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.209e-29 Identity = 64/190 (33.68%), Postives = 104/190 (54.74%), Query Frame = -1 Query: 283 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 828 S +T LRF G LN DL + NL+P+PR+HF + AP+ S L+V ++T ++ N + DPR G+Y+ ++RG + K+V+E + ++++ S FV+W P K + PP ++ A + N+T+I E + R+ +F M+ +KAFLHWY EGM+ EF EA ++ Sbjct: 243 SSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDL 432 The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bpback to top |