CN187869

Overview
NameCN187869
Unique NameCN187869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.179e-31
Identity = 66/191 (34.55%), Postives = 108/191 (56.54%), Query Frame = -1
Query:  283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831
            +S VT  LRF G LN DL +   NL+P+PR+HF +  +A + S     +  L+VPE+T   ++  N M   DPR G+Y+    ++RG +  K+V+  +  ++ + S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  110 VSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.179e-31
Identity = 66/194 (34.02%), Postives = 107/194 (55.15%), Query Frame = -1
Query:  283 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 840
            S  +S +T  LRF G LN DL +   NL+PFPR+HF +V +AP+ S     +  L+V E+T   ++  N M   DP+ G+Y+    ++RG +  K+V+  +  ++   S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++
Sbjct:  229 SQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDL 422          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 63/191 (32.98%), Postives = 105/191 (54.97%), Query Frame = -1
Query:  283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831
            +S +T  LRF G LN DL +   NL+P+PR+HF +V ++P+ S     + + +V E+T   ++  N M   DPRHG+Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C   P          +  A   + N+T+I E +  +S +F  M  ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  235 VSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 66/199 (33.17%), Postives = 109/199 (54.77%), Query Frame = -1
Query:  274 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 831
            +S +T  LRF G LN DL +   NL+PFPR+H+ ++ +AP+ S     + S    ELT Q ++  N M   DPR+G+Y+  + ++RG +  ++    +  ++ K+S   VEW P   K  +    P  +  AS             + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L
Sbjct:  236 VSSITSSLRFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASL 434          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 66/188 (35.11%), Postives = 108/188 (57.45%), Query Frame = -1
Query:  307 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 831
            +S +T  LRFPG LN D+  +  NL+PFPRLHF +  +AP+ S+   ++ ++TV  +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G  MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  144 ISSLTSSLRFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.429e-31
Identity = 68/195 (34.87%), Postives = 110/195 (56.41%), Query Frame = -1
Query:  283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD-----IP-------PRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831
            +S +T  LRF G LN DL +   NL+PFPR+HF +  +APL S   +Q+   +V E+T   +++ N M   D + G+Y+    ++RG +  K+    + +++ K +  FV+W P   K  VC+     +P       PR L M S    N+T+I   + R+  +F  M+R++AF+HWY GE M+E EF+EA  ++
Sbjct:  233 VSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLS----NTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDL 423          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.478e-31
Identity = 66/191 (34.55%), Postives = 108/191 (56.54%), Query Frame = -1
Query:  283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831
            +S +T  LRF G LN DL +   NL+P+PR+HF M  FAP+ S     +   +V ++T   +++ N +   DPR G+Y+    ++RG +  KEV+  +   ++++S  FV+W P   K  + + PP    G  +A        + N+T+I E + R+  +F  M+ ++AFLHWY  EGM+E EF EA  ++
Sbjct:  242 VSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDL 432          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.977e-31
Identity = 65/191 (34.03%), Postives = 109/191 (57.07%), Query Frame = -1
Query:  283 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 831
            +S +T  LRF G LN DL +   NL+PFPR+H+ ++ +AP+ S     + S  V +LT Q  +  N M   DPR+G+Y+  + ++RG    ++  + + +++ K S   VEW P   K  +    P    G ++A      + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  237 VSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 427          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 70/195 (35.90%), Postives = 115/195 (58.97%), Query Frame = -1
Query:  274 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 831
            MS +T  LRF G LN DL +   NL+PFPR HF M+ +AP+ +       +L+V ELT  ++D  ++M   D    G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P     G   AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++ +L
Sbjct:  240 MSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYEL 434          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.209e-29
Identity = 64/190 (33.68%), Postives = 104/190 (54.74%), Query Frame = -1
Query:  283 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 828
            S +T  LRF G LN DL +   NL+P+PR+HF +   AP+ S        L+V ++T   ++  N +   DPR G+Y+    ++RG +  K+V+E +  ++++ S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ +KAFLHWY  EGM+  EF EA  ++
Sbjct:  243 SSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDL 432          
The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA3_CHICK1.179e-3134.55Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CHICK1.179e-3134.02Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_GIBZE1.539e-3132.98Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA1_NEUCR1.539e-3133.17Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICPU2.010e-3135.11Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBAB_SCHCO3.429e-3134.87Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBAL3_HUMAN4.478e-3134.55Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA2_EMENI9.977e-3134.03Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA1_ENTHI3.791e-3035.90Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBAL3_MOUSE3.209e-2933.68Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bp
GGGCGGGCGTGCCCCCCTTTTTTTGATCAACTAACAATTCTTTATTCAAA
TGCTCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAA
ACAACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTT
CTTTTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGT
TCTCGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCC
TGATATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTC
AGTGAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGG
CCTTACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATC
TCTTGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACC
ACGTGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACT
CCACAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCC
ACCTCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTA
GCGCCCATGGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACA
TTTGCTGGGTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCC
CGTGAGGTGAGTGGTGCAAATCCCACCATGAAGAAATGAAGACGTGGGAA
TGGGATCAGATTAACAGCCAGCTTCCTGAGGTCAGAGTTGAGTTGCCCAG
GGAACCTCAGGCAGCAAGTGACACCACTCATAGTTGCAGAAAA
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