CN187869

Overview
NameCN187869
Unique NameCN187869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 6.766e-104
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 6.766e-104
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 8.837e-104
Identity = 183/190 (96.32%), Postives = 188/190 (98.95%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNM+CAADPRHGRYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMVCAADPRHGRYLTASAVFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 8.837e-104
Identity = 183/190 (96.32%), Postives = 187/190 (98.42%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +L+VPELTQQMWDAKNMMCAADPRHGRYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDI P GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 376.711 bits (966), Expect = 8.837e-104
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMC+ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  232 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCSADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 421
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.154e-103
Identity = 180/190 (94.74%), Postives = 189/190 (99.47%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWD+KNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQ++N+QNKNSSYFVEWIPNNVKSSVCDIPP+GLKMA+TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  231 SATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 420
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 376.326 bits (965), Expect = 1.154e-103
Identity = 181/190 (95.26%), Postives = 188/190 (98.95%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +L+VPELTQQMWDAKNMMCAADPRHGRYLTASA+FRGK+STKEVDEQM+N+QNKNSSYFVEWIPNNVKSSVCDI P+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.571e-103
Identity = 180/190 (94.74%), Postives = 188/190 (98.95%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQY +L+VPE+TQQMWD+KNMMCAADPRHGRYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  228 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMMCAADPRHGRYLTASAIFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 417
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.571e-103
Identity = 181/190 (95.26%), Postives = 186/190 (97.89%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            S TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPPRGL M+STFIGNSTSIQEMFRRVSEQFTAMFR KAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SGTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRTLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRPKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.358e-103
Identity = 181/190 (95.26%), Postives = 187/190 (98.42%), Query Frame = -1 
Query:  271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840
            SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL SRGSQQY +L+VPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKS+VCDIPP GL+MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  230 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLASRGSQQYRALSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLRMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBB8_ORYSJ6.766e-10496.32Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_MAIZE6.766e-10496.32Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB9_GOSHI8.837e-10496.32Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB9_ARATH8.837e-10496.32Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_MAIZE8.837e-10496.32Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB5_ARATH1.154e-10394.74Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_ARATH1.154e-10395.26Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_PEA2.571e-10394.74Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_DAUCA2.571e-10395.26Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB2_SOYBN3.358e-10395.26Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bp
GGGCGGGCGTGCCCCCCTTTTTTTGATCAACTAACAATTCTTTATTCAAA
TGCTCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAA
ACAACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTT
CTTTTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGT
TCTCGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCC
TGATATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTC
AGTGAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGG
CCTTACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATC
TCTTGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACC
ACGTGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACT
CCACAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCC
ACCTCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTA
GCGCCCATGGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACA
TTTGCTGGGTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCC
CGTGAGGTGAGTGGTGCAAATCCCACCATGAAGAAATGAAGACGTGGGAA
TGGGATCAGATTAACAGCCAGCTTCCTGAGGTCAGAGTTGAGTTGCCCAG
GGAACCTCAGGCAGCAAGTGACACCACTCATAGTTGCAGAAAA
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