CN187869

Overview
NameCN187869
Unique NameCN187869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 45/186 (24.19%), Postives = 96/186 (51.61%), Query Frame = -1
Query:  334 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYIS-----LTVPELTQQMWDAKNMMCAA-----DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMF----RRKAFLHWY 840
            +  M+  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT+  +   ++      TV ++ +++   KN+M +      D  + +Y++   + +G++   +V + +  ++ +  + F+EW P +++ ++    P      +++   + N TS++ +F +V   +  +      R+AF+  Y
Sbjct:  233 ATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSPYVQTAHRVSGLMLANHTSVRHLFNKVLRDYEKLMGPKQERQAFMQAY 418          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 51/191 (26.70%), Postives = 97/191 (50.79%), Query Frame = -1
Query:  292 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS--RGSQQYISLTVPELTQQMWDAKNMMCAA-DPRHGR--YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAE 840
            S  MS  T  LR+P  +N++L  L  +LIP P+LHF M G+ PL S           TV ++ +++   KNMM +A   +  R  +++   + +G++   +V + +  ++ +  + F+ W P +++ ++    P      K++   + N T I  +F+R   Q+  + +R AFL  +  E M + + TE +
Sbjct:  233 STIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRESMFQDDLTELD 423          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 48/170 (28.24%), Postives = 88/170 (51.76%), Query Frame = -1
Query:  343 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLT-VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 840
            S++MS  T  LRFP  L + L  L ++L P    HF M  + PL  R   Q  S T   ++ +++   +N+M     + G+Y++    F+G +S  E++E +    ++  + FV W    +K   + V  +  RG +M+   + N+TSI+  F+ + + F  MF+++ +L
Sbjct:  228 SSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPL--RQVNQISSRTSAIDVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYL 395          
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = -1
Query:  340 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKAFLH 840
            ++ MS VT  LRFP  + + L  +   L+P P LHF    F P TS    G++ +  L+  ++   ++D  N M   D     YL      +G +   +V   ++  Q +    F  W P ++  ++    P      S ++      N++SI  +F++    F  +F+R AFLH
Sbjct:  233 ASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLH 405          
The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG_CHLRE3.445e-1524.19Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG2_DROME1.309e-1426.70Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_ENTHI2.916e-1428.24Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_ASHGO4.656e-1226.29Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bp
GGGCGGGCGTGCCCCCCTTTTTTTGATCAACTAACAATTCTTTATTCAAA
TGCTCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAA
ACAACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTT
CTTTTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGT
TCTCGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCC
TGATATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTC
AGTGAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGG
CCTTACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATC
TCTTGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACC
ACGTGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACT
CCACAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCC
ACCTCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTA
GCGCCCATGGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACA
TTTGCTGGGTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCC
CGTGAGGTGAGTGGTGCAAATCCCACCATGAAGAAATGAAGACGTGGGAA
TGGGATCAGATTAACAGCCAGCTTCCTGAGGTCAGAGTTGAGTTGCCCAG
GGAACCTCAGGCAGCAAGTGACACCACTCATAGTTGCAGAAAA
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