CN187869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15 Identity = 45/186 (24.19%), Postives = 96/186 (51.61%), Query Frame = -1 Query: 334 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYIS-----LTVPELTQQMWDAKNMMCAA-----DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMF----RRKAFLHWY 840 + M+ T LR+PG +N+DL L +LIP PR HF M G+ PLT+ + ++ TV ++ +++ KN+M + D + +Y++ + +G++ +V + + ++ + + F+EW P +++ ++ P +++ + N TS++ +F +V + + R+AF+ Y Sbjct: 233 ATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSPYVQTAHRVSGLMLANHTSVRHLFNKVLRDYEKLMGPKQERQAFMQAY 418
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14 Identity = 51/191 (26.70%), Postives = 97/191 (50.79%), Query Frame = -1 Query: 292 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS--RGSQQYISLTVPELTQQMWDAKNMMCAA-DPRHGR--YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAE 840 S MS T LR+P +N++L L +LIP P+LHF M G+ PL S TV ++ +++ KNMM +A + R +++ + +G++ +V + + ++ + + F+ W P +++ ++ P K++ + N T I +F+R Q+ + +R AFL + E M + + TE + Sbjct: 233 STIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRESMFQDDLTELD 423
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14 Identity = 48/170 (28.24%), Postives = 88/170 (51.76%), Query Frame = -1 Query: 343 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLT-VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 840 S++MS T LRFP L + L L ++L P HF M + PL R Q S T ++ +++ +N+M + G+Y++ F+G +S E++E + ++ + FV W +K + V + RG +M+ + N+TSI+ F+ + + F MF+++ +L Sbjct: 228 SSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPL--RQVNQISSRTSAIDVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYL 395
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12 Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = -1 Query: 340 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKAFLH 840 ++ MS VT LRFP + + L + L+P P LHF F P TS G++ + L+ ++ ++D N M D YL +G + +V ++ Q + F W P ++ ++ P S ++ N++SI +F++ F +F+R AFLH Sbjct: 233 ASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLH 405 The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bpback to top |