CN187869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 5.018e-99 Identity = 172/190 (90.53%), Postives = 186/190 (97.89%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA +SGVT CLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQY +LTVPELTQQM+DAKNMM A+DPRHGRYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKM+STF+GNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SACISGVTACLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMSASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4) HSP 1 Score: 360.533 bits (924), Expect = 6.554e-99 Identity = 173/190 (91.05%), Postives = 184/190 (96.84%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA MSG+TCCLRFPGQLNSDLRKLAVNLIPFPRLHFF+VGFAPLTSRGS Y SLTVPELTQQM+DAKNMM A+DPRHGRYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKMA TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SAVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSVGYRSLTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2) HSP 1 Score: 360.147 bits (923), Expect = 8.560e-99 Identity = 172/190 (90.53%), Postives = 184/190 (96.84%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA MSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQY +LTVPELTQQM+DAKNMMCA+DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP+GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1) HSP 1 Score: 360.147 bits (923), Expect = 8.560e-99 Identity = 172/190 (90.53%), Postives = 184/190 (96.84%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA MSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQY +LTVPELTQQM+DAKNMMCA+DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP+GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1) HSP 1 Score: 358.221 bits (918), Expect = 3.253e-98 Identity = 170/189 (89.95%), Postives = 182/189 (96.30%), Query Frame = -1 Query: 271 ATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 837 A MSGVT CLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQY +LTVPELTQQ +DAKNMMCAADPRHGRYLTAS MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKM++ FIGNST+IQEMF+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 206 ACMSGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 394
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1) HSP 1 Score: 357.066 bits (915), Expect = 7.246e-98 Identity = 168/190 (88.42%), Postives = 184/190 (96.84%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA MSGVTC LRFPGQLNSDLRKLAVNL+PFPRLHFF++GFAPLTSRGSQQY +LTVPELTQQM+DAKNMMCA+DPRHGRYLTA A+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KS VCDIPP+GLKM+ TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SAAMSGVTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFLIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSGVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1) HSP 1 Score: 356.681 bits (914), Expect = 9.464e-98 Identity = 170/190 (89.47%), Postives = 182/190 (95.79%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA +SGVTCCLRFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPLTSRGSQQY L+VPELTQQM+DAKNMM AADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSSVCDIPP+GLKMA TFIGN+T IQEMFRRV EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SAVVSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 2.108e-97 Identity = 171/190 (90.00%), Postives = 181/190 (95.26%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SA MSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFM GFAPLTSRGSQQY +LTVPELTQQM+DAKNMMC +DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMYGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCTSDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPLGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1) HSP 1 Score: 352.443 bits (903), Expect = 1.785e-96 Identity = 167/190 (87.89%), Postives = 182/190 (95.79%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SATMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQY SLTVPELTQQM+D KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDGKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
BLAST of CN187869 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1) HSP 1 Score: 352.058 bits (902), Expect = 2.331e-96 Identity = 167/190 (87.89%), Postives = 183/190 (96.32%), Query Frame = -1 Query: 271 SATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 840 SATMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV Sbjct: 230 SATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419 The following BLAST results are available for this feature:
BLAST of CN187869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187869 ID=CN187869; Name=CN187869; organism=Citrus sinensis; type=EST; length=843bpback to top |