CK938765

Overview
NameCK938765
Unique NameCK938765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 2
Query:  563 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSM 760
            VRARRGQATD HS+AER RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 210          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 2
Query:  563 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSM 760
            VRARRGQATD HS+AER RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  144 VRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 208          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH054_ARATH (Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 54/191 (28.27%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  185 LAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMGESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLS 757
            L +++PF    GG   A L   +  H   E+S+L+   +    + + +   C   R++L+   +  ++   +S +N +++SN  W+      N +  + +   +S  G                   RA +G ATD  SL  R RREKI+ER+K LQ+LVP   KV   + +L+E ++Y++ LQ Q++ LS
Sbjct:   63 LPDMFPFGAMPGGNLPAMLDSWDQSHHLQETSSLKRKLLDVENLCK-TNSNCDVTRQELAKSKKKQRV---SSESNTVDESNTNWVDGQSLSNSSDDE-KASVTSVKGK-----------------TRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKV-DISTMLEEAVHYVKFLQLQIKLLS 230          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: PIF4_ARATH (Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 58/183 (31.69%), Postives = 88/183 (48.09%), Query Frame = 2
Query:  275 SSALRDGSMGESTVTEQSGGGCG----RKRRDLSSEDESSKIV-------STTSSANDLNDSNGKWMKTSGS----------KNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSM 760
            SS +R+  M + +VT      CG    +   D+S   + SK +       +++SS      S GK +K   S          K  N +   V  S A GN                    RR +A + H+L+ER RR++I+ERMK LQ+L+P C+K   KA +LDE I+Y++SLQ Q++ + M
Sbjct:  145 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKNIEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSDAIGNKSNQRSGSN-----------RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQVMWM 315          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.012e-11
Identity = 32/64 (50.00%), Postives = 51/64 (79.69%), Query Frame = 2
Query:  569 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSM 760
            ++R ++ + H+L+ER RR++I+E+M+ LQ+L+P CNKV  KA +LDE I Y++SLQ QV+ +SM
Sbjct:  339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQIMSM 401          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  572 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSM 760
            +R +A + H+L+ER RR++I+ERMK LQ+L+P CNK   KA +LDE I Y++SLQ Q++ +SM
Sbjct:  281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK-SDKASMLDEAIEYMKSLQLQIQMMSM 342          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH119_ARATH (Transcription factor bHLH119 OS=Arabidopsis thaliana GN=BHLH119 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.764e-11
Identity = 31/63 (49.21%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  572 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSM 760
            +R +A D H+L+ER RRE+I+ERMK LQ+L+P C K   K  +L+++I Y++SLQ Q++ +SM
Sbjct:  354 KRSRAADMHNLSERRRRERINERMKTLQELLPRCRKT-DKVSMLEDVIEYVKSLQLQIQMMSM 415          
The following BLAST results are available for this feature:
BLAST of CK938765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UNE12_ARATH8.469e-1459.09Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
BH007_ARATH1.106e-1359.09Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]
BH054_ARATH1.597e-1228.27Transcription factor bHLH54 OS=Arabidopsis thalian... [more]
PIF4_ARATH2.725e-1231.69Transcription factor PIF4 OS=Arabidopsis thaliana ... [more]
PIF3_ARATH3.012e-1150.00Transcription factor PIF3 OS=Arabidopsis thaliana ... [more]
PIF1_ARATH3.934e-1152.38Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
BH119_ARATH8.764e-1149.21Transcription factor bHLH119 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_E04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938765 ID=CK938765; Name=CK938765; organism=Citrus sinensis; type=EST; length=839bp
GGGGACTCACTCACTCGCTCACAAACTCTCCAAAATCCAAACTTTCTCTC
ATCTACCAGGGGCCTCGAGTGCCTGGATCCGAATCCCAATCCGCCTTTTT
AATGTACCCACCCGGGTCACTAAAATGGATCCTCCGCTTGTAAACGAGTC
TTCCTTCTCTGCTGCCAACCCTTCATCCTACAGTTTGGCAGAGATTTGGC
CTTTTCCAATCAACAATGGCGGTGCCGGTGATGCCGGTCTTCGAATGGGG
AATATGGGTCATGGGTTCGGGGAAAGTTCGGCTCTCAGAGATGGGTCGAT
GGGGGAATCAACAGTGACTGAGCAGAGTGGTGGTGGGTGTGGCAGAAAGA
GAAGGGATTTGAGCTCTGAAGATGAATCTTCTAAGATTGTTTCTACTACT
AGTAGTGCCAATGACTTGAATGATTCAAATGGTAAATGGATGAAAACATC
GGGATCAAAAAATGAAAATGGTTCAAAAGCTGAAGTGGAAGCAAGTTCTG
CAGCTGGTAACAAGCCAGCTGAAAGTAGTAAACCCTCTGAGCCACCTAAA
GACTATATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGATAGCCATAG
TTTAGCAGAGAGAGCTAGACGAGAAAAAATTAGCGAGAGGATGAAGATTC
TGCAGGATCTGGTCCCTGGATGCAATAAGGTTATTGGAAAAGCTCTTGTT
CTCGATGAAATAATTAATTACATTCAGTCACTACAACGGCAGGTTGAGTC
CCTGTCAATGAAGTTAGAAGCTGTTAATTCAAGGATGAACTTGACTCCTA
CCATTGAAGGGTTTCATCCAAAAGATCTTGGTGAACAGG
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