CK938762

Overview
NameCK938762
Unique NameCK938762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:107..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP10_HUMAN (Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.577e-14
Identity = 69/288 (23.96%), Postives = 130/288 (45.14%), Query Frame = 3
Query:   54 AGGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAERE------------IVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP----------DGQVI--TIGAERFRCPEVLFQ 845
            +GGE    +V D G    K GFAG+  PR + PS++ R                    A   + +  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F  P++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+    T+ A+ +            ++ D+K +  +++ D ++ L+       ++ + E P          DG+ I   +G+ R    E+LF+
Sbjct:    9 SGGEKTA-VVIDLGEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMPKPVRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVS-DLKRGLKIQAAKFNIDGNNERPSPPPNVDYPLDGEKILHILGSIRDSVVEILFE 272          
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP6_DEBHA (Actin-like protein ARP6 OS=Debaryomyces hansenii GN=ARP6 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.514e-14
Identity = 76/294 (25.85%), Postives = 121/294 (41.16%), Query Frame = 3
Query:   72 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE---AQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN-------APAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSK-------------TSSAVEKSYELP-----DGQVITIGAERFRCPEVLFQPSMI 857
            Q  V DNG+  +KAGF+  DAP           +H   +        YVG+E     +    +  K P +HG + +W+  + +W +TF     N+   A   H + LTE P           QI+FE +        APA  V    + S  +      +V+DSG   +  VPI         + +L + G  L   L +I++ R Y      E  ++  +KEK  ++A D+E+ L   K             T++   K+ + P     D Q + +  ERF  PE  + P +I
Sbjct:    4 QYFVIDNGSYNIKAGFSNQDAP----------IKHQNALSKARDGLIYVGNEYLVQTNNYSGMIFKRPYDHGHLISWETEKAVWDYTFNKASPNQELDASITH-LTLTETPFQLPQLSMNTDQIVFEEYGFNEYYRCAPASLVPWSNLGSSESKNNDFTLVVDSGYSGTWIVPIIYQNVYWKGVKKLPIGGAALNGLLREIISFRHYDIAD--EPVLINTIKEKTCFMATDFEKSLANRKKYRCEFILPDFKTTTTGFVKTKDTPIDTTGDVQSLALIDERFTIPESFYHPEII 284          
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP10_MOUSE (Actin-related protein 10 OS=Mus musculus GN=Actr10 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13
Identity = 70/287 (24.39%), Postives = 128/287 (44.60%), Query Frame = 3
Query:   57 GGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAERE------------IVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP----------DGQVI--TIGAERFRCPEVLFQ 845
            GGE    +V D G    K GFAG+  PR + PS++ R                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F  P++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+    T  A+ +            ++ D+K +  +++ D ++ L+       ++ + E P          DG+ I   +G+ R    E+LF+
Sbjct:   10 GGEKTA-VVIDLGEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMSKPIKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGGKALHKELETQLLEQCTVDTGAAKGQSLPSVMGSVPEGVLEDIKVRTCFVS-DLKRGLQIQAAKFNIDGNNERPTPPPNVDYPLDGEKILHVLGSIRDSVVEILFE 272          
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP10_BOVIN (Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.768e-13
Identity = 70/288 (24.31%), Postives = 128/288 (44.44%), Query Frame = 3
Query:   54 AGGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAERE------------IVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP----------DGQVI--TIGAERFRCPEVLFQ 845
            +GGE    +V D G    K GFAG+  PR + PS++ +                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F  P++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+    T  A+ +            I+ D+K +  +++ D ++ L        ++ + E P          DG+ I   +G+ R    E+LF+
Sbjct:    9 SGGEKTA-VVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGILEDIKVRTCFVS-DLKRGLNIQAAKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILFE 272          
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 52/240 (21.67%), Postives = 109/240 (45.42%), Query Frame = 3
Query:   78 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-----HTGVMVGMGQK-------DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLS-----LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 737
            LV DNG+   + G++    P   F +++ +PR           G   +       +  VG++  +   +   LK P E  +++NW+  E+I+ + F        +  +HP++LTEA  NP   R++M +++FE +  P++   I A+ S           +  +++  G   +H +P+ +G      + RL++ G  +   L +++  +            +  +  +  +IA+DY++EL
Sbjct:    7 LVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEGSASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLMQMKYPVHLNAITISRMEKLVHEHCHIAVDYKEEL 246          
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP7_YEAST (Actin-related protein 7 OS=Saccharomyces cerevisiae GN=ARP7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 44/179 (24.58%), Postives = 83/179 (46.37%), Query Frame = 3
Query:   78 LVCDNGTGMVKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 602
            +V  NG+    AGF+  + P+ + PS  + R    G    +      +   A+ + G          G+  NWD +E  W + +  +L+V+PEE P+++T    N K   A  E+  ++ F+  N P   + I+ +    + G+++  V+D G    +  PI +G  + +A++R    G
Sbjct:    8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFGG 186          
BLAST of CK938762 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 57/249 (22.89%), Postives = 114/249 (45.78%), Query Frame = 3
Query:   60 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 737
            G   + LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE +  PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +   L+ ++  +            +  +  +  +IA+DY +EL
Sbjct:    2 GSPKRVLVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLMQMKYPVHLNAISISRMEKLVHEHCHIAVDYREEL 249          
The following BLAST results are available for this feature:
BLAST of CK938762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
ARP10_HUMAN5.577e-1423.96Actin-related protein 10 OS=Homo sapiens GN=ACTR10... [more]
ARP6_DEBHA9.514e-1425.85Actin-like protein ARP6 OS=Debaryomyces hansenii G... [more]
ARP10_MOUSE1.243e-1324.39Actin-related protein 10 OS=Mus musculus GN=Actr10... [more]
ARP10_BOVIN2.768e-1324.31Actin-related protein 10 OS=Bos taurus GN=ACTR10 P... [more]
ARP5_DROME4.722e-1321.67Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP7_YEAST1.794e-1224.58Actin-related protein 7 OS=Saccharomyces cerevisia... [more]
ARP5_DROPS3.060e-1222.89Actin-related protein 5 OS=Drosophila pseudoobscur... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_F10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938762 ID=CK938762; Name=CK938762; organism=Citrus sinensis; type=EST; length=906bp
GGGGGCGCCTCGTAATTCGCTCGTTCTCATCTCATAACCGGTAGCAGAAG
ATGGCAGGCGGTGAGGATATTCAGCCACTTGTTTGTGATAATGGAACAGG
AATGGTTAAGGCTGGGTTTGCCGGAGATGATGCTCCACGGGCGGTGTTCC
CCAGTATTGTTGGTCGTCCACGTCACACTGGTGTGATGGTTGGCATGGGT
CAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCGAAGAGAGGTATTTT
GACTTTGAAATACCCCATTGAGCATGGTATTGTGAGCAACTGGGATGACA
TGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCT
GAAGAGCACCCTGTTCTTCTTACTGAGGCTCCTCTCAATCCGAAGGCTAA
TCGCGAGAAGATGACCCAGATTATGTTTGAGACCTTTAATGCTCCCGCTA
TGTATGTTGCCATCCAGGCCGTTCTTTCCTTGTATGCGAGTGGTCGTACC
ACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCATACAGTTCCTAT
ATATGAGGGTTATGCCCTCCCACATGCAATACTTCGTCTTGACCTTGCTG
GTCGTGACCTCACTGATAACTTGATGAAAATCCTCACTGAGCGTGGGTAC
TCTTTCACCACCACGGCGGAGCGTGAAATTGTCAGGGACATGAAGGAAAA
GCTGGCTTACATCGCTCTTGACTATGAACAGGAGCTTGAGACCTCCAAGA
CCAGCTCTGCAGTTGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTTATC
ACTATTGGCGCTGAGCGTTTCAGGTGTCCTGAGGTCCTTTTCCAACCATC
CATGATTGGTATGGAAGCAGCANGCATCCACGAGACCACTTACAACTCCA
TCATNN
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