CN187856

Overview
NameCN187856
Unique NameCN187856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 378.252 bits (970), Expect = 2.625e-104
Identity = 181/212 (85.38%), Postives = 197/212 (92.92%), Query Frame = -3
Query:  138 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 773
            V + ++KC TVGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FYMVMQ LGA+CGAGVVKGFEG + +  L GGAN VA GYTKGDGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+FNK   W+DHWIFWVGPFIGAALAA+YHQ+VIRAIPFKS+
Sbjct:   78 VVRESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 289          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 3.428e-104
Identity = 181/212 (85.38%), Postives = 199/212 (93.87%), Query Frame = -3
Query:  138 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 773
            VSKS++KC+TVGIQGIAW+FGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FYMVMQCLGA+CGAGVVKGF+    Y   GGGAN V  GYTKGDGLGAEI+GTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI++N+ HAW+DHWIFWVGPFIGAALAA+YH ++IRA+PFKSR
Sbjct:   77 VSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGL-YMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKSR 287          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 9.975e-104
Identity = 182/209 (87.08%), Postives = 197/209 (94.26%), Query Frame = -3
Query:  147 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPF 773
            + +S++ CS+VGIQG+AWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFYMVMQCLGA+CGAGVVKGF     Y+RLGGGANVV  GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+N +HAW+DHWIFWVGP IGAALAA+YHQI+IRA+PF
Sbjct:   76 LKRSDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGP-YQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRAMPF 283          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 376.326 bits (965), Expect = 9.975e-104
Identity = 183/212 (86.32%), Postives = 196/212 (92.45%), Query Frame = -3
Query:  138 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 773
            V+KS +KC+TVGIQGIAW+FGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFYM MQCLGA+CGAGVVKGF+    Y   GGGAN V  GYTKGDGLGAEI+GTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI++N+ HAW DHWIFWVGPFIGAALAA+YH +VIRAIPFKSR
Sbjct:   77 VNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGL-YMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKSR 287          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 1.103e-102
Identity = 182/213 (85.45%), Postives = 194/213 (91.08%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            VSKS +KC TVGIQGIAWAFGGMI+ALVYCTAG+SGGHINPAVTFGLLLARKLSLTRAV+Y+VMQCLGAVCGAGVVK F GS  YE  GGGAN V+ GYTKGDGLGAE++GTFVLVYTVFSATDAKR ARDSHVP LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII++  H W  HWIFWVGPF GAALAAVYHQ+V+RAIPFKS A
Sbjct:   83 VSKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAF-GSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKSSA 294          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.337e-99
Identity = 177/213 (83.10%), Postives = 194/213 (91.08%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            VSKS +KC+TVGIQGIAW+FGGMI ALVYCTAGISG HINPAVTFGL LARKLSLTRAVFY++MQCLGA+CG GVVKGF+    Y   GG  NVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKR ARDSHVPILAPLPIGFAVFLVHLAT+ ITGTGINPARSLGAA+I+N+ HAW DHWIFWVGPFIGAALAA+YHQ++IRAIPFKSR+
Sbjct:   77 VSKSTSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGL-YMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKSRS 287          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.144e-91
Identity = 160/206 (77.67%), Postives = 180/206 (87.38%), Query Frame = -3
Query:  156 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 773
            V+ ++  CS VGI GIAWAFGGMI+ LVYCTAGISGGHINPAVTFGL LARK+SL RAV Y++ QCLGA+CG G+VKGF+ S  Y R GGGAN ++ GY+KG GLGAEIIGTFVLVYTVFSATD KRNARDSH+P+LAPLPIGFAVF+VHLATIPITGTGINPARSLG A+I+NKD AWDD WIFWVGP IGAA+AA YHQ V+RA
Sbjct:   72 VNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSY-YARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 7.415e-91
Identity = 159/205 (77.56%), Postives = 178/205 (86.83%), Query Frame = -3
Query:  156 SKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 770
            S  +  C  VG+ GIAWAFGGMI+ LVYCTAG+SGGHINPAVTFGL LARK+SL RA+ Y+V QCLGA+CG G+VKGF+ S  Y R GGGAN ++ GY+KG GL AEIIGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+I+N D AWDDHWIFWVGPFIGAA+AA YHQ V+RA
Sbjct:   69 SGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQ-SAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRA 272          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.652e-90
Identity = 156/210 (74.29%), Postives = 181/210 (86.19%), Query Frame = -3
Query:  141 SKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 770
            S ++  C  VG+ GIAWAFGGMI+ LVYCTAGISGGHINPAVTFGL LARK+SL RA+ Y+V QCLGA+CG G+VK F+ S  ++R GGGAN +A GY++G GLGAEIIGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+I+NKD  WDDHWIFWVGP +GAA+AA YHQ ++RA   K+
Sbjct:   74 SGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQ-SAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKA 282          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.157e-90
Identity = 155/208 (74.52%), Postives = 180/208 (86.54%), Query Frame = -3
Query:  141 SNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 764
            ++  C  VG+ GIAWAFGGMI+ LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YMV QCLGAVCG G+VK F+ S  ++R GGGAN +A GY++G GLGAEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+++NKD  WDDHWIFWVGP +GAA+AA YHQ ++RA   K+
Sbjct:   78 ADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQ-SAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKA 284          
The following BLAST results are available for this feature:
BLAST of CN187856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
PIP2_PEA2.625e-10485.38Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP15_MAIZE3.428e-10485.38Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP1_SOLLC9.975e-10487.08Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ORYSJ9.975e-10486.32Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE1.103e-10285.45Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP11_MAIZE4.337e-9983.10Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP22_ORYSJ1.144e-9177.67Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE7.415e-9177.56Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP21_MAIZE1.652e-9074.29Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE2.157e-9074.52Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187856 ID=CN187856; Name=CN187856; organism=Citrus sinensis; type=EST; length=775bp
TTTACGCAATGCTNATAATTTACACACAATTAATTAACATCTTAAACAGT
CTATCACCAAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAAT
TAAAAAAAAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAG
GGAATGGCCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCC
AATGAATGGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTT
TGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTT
CCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAAT
GGGGAGGGGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCG
CATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATC
TCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGC
TCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAA
CACCAGCACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACA
GCCCTTGTCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGC
TGGGTTGATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAT
AGATCATGCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAG
CACTTGGTGTTAGACTTAGAGACAC
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