CN187856

Overview
NameCN187856
Unique NameCN187856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:297..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQP9_RAT (Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 63/217 (29.03%), Postives = 91/217 (41.94%), Query Frame = -3
Query:  159 GIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYT-------------KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW---------DDHWIFWVGPFIGAALAAVYHQIVIR 740
            GI  I   F   +   +Y T GISGGHINPAV+F +    ++   +  FY+  Q LGA  GA  V G          GG   VV    T                    +++ T  L+  VF+  D    +R+  VP  L P+ IG  + ++  +    +G  +NPAR L    +F     W         +  WI  VGP IGA L  + + + I+
Sbjct:   56 GIITINIGFASAVVMALYVTFGISGGHINPAVSFAMCAFGRMEWFKFPFYVGAQFLGAFVGAATVFGIYYDGLMAFAGGKLLVVGENATAFIFATYPAPFISTPGAFVDQVVSTMFLLLIVFAMFD----SRNLGVPRGLEPVVIGLLIIVLSCSLGLNSGCAMNPARDLSPR-LFTALAGWGFEVFTVGNNFWWIPVVGPMIGAFLGGLIYILFIQ 267          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQP9_MOUSE (Aquaporin-9 OS=Mus musculus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 62/217 (28.57%), Postives = 92/217 (42.40%), Query Frame = -3
Query:  159 GIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG--------FEGSKNYERLGGGANVVAHGYTK-----GDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAW---------DDHWIFWVGPFIGAALAAVYHQIVIR 740
            GI  I   F   +   +Y T G+SGGHINPAV+F +    ++   +  FY+  Q LGA  GA  V G        F   K       G   +   Y K           +++ T  L+  VF+  D    +R+  VP  L P+ IG  + ++  +    +G  +NPAR L    +F     W         +  WI  VGP IGA L  + + + I+
Sbjct:   56 GIITINIGFATAVVMALYATFGVSGGHINPAVSFAMCTFGRMEWFKFPFYVGAQLLGAFVGAATVFGIYYDGLMAFADGKLLITGENGTAFIFATYPKPFVSVPGAFVDQVVSTMFLLLIVFAIFD----SRNLGVPRGLEPIVIGLLIIVISCSLGLNSGCAMNPARDLSPR-LFTALAGWGFEVFTFGNNFWWIPVVGPMIGAVLGGLIYVLFIQ 267          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 62/194 (31.96%), Postives = 79/194 (40.72%), Query Frame = -3
Query:  183 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV--KGFEGSKNYERLGGGANVVAHGYTK---GDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF-------NKDHAWDDHWIFWVGPFIGAALAA 728
            I   +G  +   VY    ISG HINPAVT GL    +   ++   Y+  Q LGA  GA +V        K  +       V   G      G  L  EIIGT VL+  V      K          L PL +GF V+ + L+    TG  INPAR  G  +          +D  W   W+  +GP IG  L A
Sbjct:   40 ITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKYGANLLTEIIGTMVLLMGVLGIGANKL------ADGLNPLLVGFLVWSIGLSLGGPTGYAINPARDFGPRLAHAILPIPGKRDSDWSYSWVPIIGPIIGGILGA 227          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 58/225 (25.78%), Postives = 93/225 (41.33%), Query Frame = -3
Query:  150 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG------FEGSKNYERLGGGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHW--IFWVG-------------PFIGAALAA-VYHQIVIRAIP 728
            + W  G  +   +Y TAG+SG H+NPAVT  L L       + + ++V Q  GA C A +V G      F+  + +  + G    V    T                 E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +      AW   W  + + G             P +GA + A  Y +++ R +P
Sbjct:   46 VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAFAYRKLIGRHLP 260          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 58/191 (30.37%), Postives = 86/191 (45.03%), Query Frame = -3
Query:  165 GIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG-FEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 731
            G A + G  +  ++  T  ISG H+NPAVT      +         Y+  Q + +V  A  +K  FE +     + GG  V   G ++   L  E I +F L++ V + ATD +       V  LA + +G  V L  L   P T   +NP R+LG AI  N   A    W++   P +GA + A  + IV
Sbjct:  114 GCAASAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFEPT-----MSGGVTVPTVGLSQAFAL--EFIISFNLMFVVTAVATDTRA------VGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRA---IWVYLTAPILGALIGAGTYTIV 288          
The following BLAST results are available for this feature:
BLAST of CN187856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQP9_RAT4.449e-1129.03Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1[more]
AQP9_MOUSE4.449e-1128.57Aquaporin-9 OS=Mus musculus GN=Aqp9 PE=2 SV=1[more]
GLPF_THEMA7.589e-1131.96Probable glycerol uptake facilitator protein OS=Th... [more]
GLPF_SHIFL7.589e-1125.78Glycerol uptake facilitator protein OS=Shigella fl... [more]
NIP61_ARATH9.911e-1130.37Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187856 ID=CN187856; Name=CN187856; organism=Citrus sinensis; type=EST; length=775bp
TTTACGCAATGCTNATAATTTACACACAATTAATTAACATCTTAAACAGT
CTATCACCAAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAAT
TAAAAAAAAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAG
GGAATGGCCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCC
AATGAATGGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTT
TGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTT
CCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAAT
GGGGAGGGGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCG
CATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATC
TCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGC
TCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAA
CACCAGCACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACA
GCCCTTGTCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGC
TGGGTTGATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAT
AGATCATGCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAG
CACTTGGTGTTAGACTTAGAGACAC
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