CN187856

Overview
NameCN187856
Unique NameCN187856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:297..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26
Identity = 72/193 (37.31%), Postives = 107/193 (55.44%), Query Frame = -3
Query:  165 GIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 740
            G+   + A    ++  V   A ISGGH+NPAVTFG  +   +SL +AV Y V Q LG+V    ++K   G         GA  ++ G    + +  EI+ TF LVYTV+ +A D K+      + ++AP+ IGF V    LA     G  +NPA S G A++      WD+HW++W+GPF+GAA+AA+ + I+
Sbjct:   57 GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGG-----AAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVGAAIAALIYDII 237          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26
Identity = 71/189 (37.57%), Postives = 102/189 (53.97%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA+ Y+V Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IGA L ++ +  ++
Sbjct:   44 VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.749e-26
Identity = 75/198 (37.88%), Postives = 103/198 (52.02%), Query Frame = -3
Query:  168 VGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG-GANVVAH----GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQI 743
            +G  G+A+AFG  +  + Y   GISGGH NPAV+ GL +A K      V Y+V Q LGAV  A  +      K    +GG  AN        GY+    L  EII T   +  +  +T  +       VP+  AP+ IG A+ L+HL +IP+T T +NPARS G A +F    A    W+FW+ P +G A+ AV  +I
Sbjct:   34 IGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPILGGAIGAVVWKI 223          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.749e-26
Identity = 72/189 (38.10%), Postives = 102/189 (53.97%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            IA AFG  I  LV     +SG HINPAVT   L+   +S  RA FY+  Q LGAV GA ++   E +    R     N + +  T G  +  E+  T  LV  +F++TD +R+           L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW+GP +GA + ++ +  ++
Sbjct:   44 IAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.896e-26
Identity = 63/191 (32.98%), Postives = 103/191 (53.93%), Query Frame = -3
Query:  159 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVK-GFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIR 728
            IA+ FG  +  +      +SG HINPAVT G L+  ++S+ +A FY+++QC+GA+ GA V+K   +G    +    G +           +  E + TF+LV+ V + +D  R      +   APL +G A+   HL  I ++G  +NPARS G A++      W  HW++WVGP  G  LA + ++++ +
Sbjct:   52 IAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGVAGGDL---GVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVV---QGVWTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.395e-26
Identity = 74/198 (37.37%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  174 SNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 764
            S+    T G+  IA   G  ++  V   A ISGGH+NPAVTFGL +  ++++   VFY + Q LG+     ++K   G      L    + VA G    +G+  EII TF LVYTV+ +A D K+ +    +  +APL IG  V    LA  P +G  +NPARS G A+       +  HW++WVGP IG  LA + +
Sbjct:   47 SDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGG-----LAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.395e-26
Identity = 67/193 (34.72%), Postives = 101/193 (52.33%), Query Frame = -3
Query:  180 VGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG-----GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAV 743
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y++ Q  GA+  A V+      K   +LG     G       GY+    L  E++ TF  +  +  +T  +  A        AP+ IG A+ L+HL +IP+T T +NPARS G A +F    A    W+FW+ P  GAA+A +
Sbjct:   34 IGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPARSTGQA-LFVGGWALSQLWLFWIAPLFGAAIAGI 219          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = -3
Query:  165 IYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 704
            ++  V   A +SGGH+NPAVTFG  +   ++L RA+ Y + Q LGAV    ++K   G      +   A  +++G T  + +  EI+ TF LVYTV+ +A D K+      + I+APL IG  V    L      G  +NPA S G A++      W +HW++WVGPFIGAA+AA+ +  +
Sbjct:   69 LFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGG-----METAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 72/189 (38.10%), Postives = 101/189 (53.44%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            IA AFG  I  LV     +SG HINPAVT   L+   +S  RA FY+  Q LGAV GA ++   E +    R     N + +  T G  +  E+  T  LV  +F++TD +R            L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW+GP +GA + ++ +  ++
Sbjct:   44 IAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLL 223          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.091e-25
Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  YM  Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IG  L ++ +  ++
Sbjct:   44 VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
The following BLAST results are available for this feature:
BLAST of CN187856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TIP12_ORYSJ2.870e-2637.31Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_SHEEP2.870e-2637.57Lens fiber major intrinsic protein OS=Ovis aries G... [more]
AQPZ1_AGRT53.749e-2637.88Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
AQP2_MOUSE3.749e-2638.10Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
AQP_DROME4.896e-2632.98Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIP21_ARATH6.395e-2637.37Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
AQPZ2_RHIME6.395e-2634.72Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
TIP13_ARATH8.352e-2637.57Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
AQP2_RAT8.352e-2638.10Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_CANFA1.091e-2537.04Lens fiber major intrinsic protein OS=Canis famili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187856 ID=CN187856; Name=CN187856; organism=Citrus sinensis; type=EST; length=775bp
TTTACGCAATGCTNATAATTTACACACAATTAATTAACATCTTAAACAGT
CTATCACCAAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAAT
TAAAAAAAAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAG
GGAATGGCCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCC
AATGAATGGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTT
TGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTT
CCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAAT
GGGGAGGGGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCG
CATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATC
TCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGC
TCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAA
CACCAGCACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACA
GCCCTTGTCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGC
TGGGTTGATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAT
AGATCATGCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAG
CACTTGGTGTTAGACTTAGAGACAC
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