CN187856

Overview
NameCN187856
Unique NameCN187856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:297..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  Y+  Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IG  L ++ +  ++
Sbjct:   42 VALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  Y+  Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IG  L ++ +  ++
Sbjct:   44 VALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 68/181 (37.57%), Postives = 95/181 (52.49%), Query Frame = -3
Query:  186 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALA 728
            IA  FG  +   ++C AG+SGG +NPAV+  L LAR +S TR V   V Q +  +   G        +        AN +  G ++  GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAA+       +  HWI+W+GP +G+ LA
Sbjct:   94 IAIGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVL-----FANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILA 262          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25
Identity = 68/181 (37.57%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  186 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALA 728
            IA  FG  +   ++C AG+SGG +NPAV+  L LAR +S  R V     Q +  +   G        K         N +  G ++  GL  E+ GT VL  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAA+       +  HWI+W+GP +GA LA
Sbjct:   93 IALGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAISPARCVVMWFPQIIAGMAAGGAASAMTPGKVLF-----TNALGLGCSRSRGLFLEMFGTAVLCLTVLMTAVEKRETN-----FMAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 73/209 (34.93%), Postives = 108/209 (51.67%), Query Frame = -3
Query:  156 SNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAA-VYHQIVIRA 764
            S+      G+  +A A    ++  V   A +SGGH+NPAVT GL +   +++   +FY + QCLG+     ++K          +  G +V  HG   G     G+  EII TF LVYTV+ +A D K+ +    + ++AP+ IGF V    LA  P +G  +NPARS G A+       +  +WI+W GP IG ALA  +Y  + I A
Sbjct:   47 SDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK---------FVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIYGDVFITA 239          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 76/195 (38.97%), Postives = 103/195 (52.82%), Query Frame = -3
Query:  162 GIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAA-VYHQIVI 740
            G+  +A A    +   V     ISGGH+NPAVTFG L+  ++SL RAV Y V Q LGAV    +++   G     R  G A  +A G      +  E + TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W  HW++W+GPF+GA LA  VY  +VI
Sbjct:   61 GLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGM---RPPGFA--LASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLVI 243          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 68/193 (35.23%), Postives = 107/193 (55.44%), Query Frame = -3
Query:  165 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 728
            IA AF   ++  V   A ISGGH+NPAVTFG  +   ++L R + Y++ Q LG++  + ++     S          +V A G ++G G+G     EI+ TF LVYTV+ +A D K+     ++ I+AP+ IGF V    L     TG  +NPA S G A++     +W +HW++W GP IG  +A + ++++
Sbjct:   63 IAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS----------SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 72/189 (38.10%), Postives = 99/189 (52.38%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            IA  F  +    V  T   SG H NPAVT   L+   +SL RAV Y+  Q +GA  GA ++ G       E L  G NVV +  + G  +  E++ T  LV  VF++TD+++ +            IG +V L HL  I  TG  +NPARS G AII  K   +  HW+FWVGP +GA LA++ +  V+
Sbjct:   58 IAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETL--GINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGS------PATMIGISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 70/196 (35.71%), Postives = 106/196 (54.08%), Query Frame = -3
Query:  162 IAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 728
            +A A    ++A V  +  +SGGH+NPAV+FG L+  ++S+ RAV+Y + Q LG++  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++      W  HWIFWVGP +GAALAA+ ++  +
Sbjct:   61 LALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAALVYEYAV 238          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 71/194 (36.60%), Postives = 103/194 (53.09%), Query Frame = -3
Query:  162 GIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 740
            G+  ++ A    +   V     ISGGH+NPA+TFG LL  +LSL RA+FY + Q LGAV    +++   G     R  G A  +A G      +  E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W  HW++W+GPF+GA LA + ++ ++
Sbjct:   62 GLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGM---RPPGFA--LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLV 243          
The following BLAST results are available for this feature:
BLAST of CN187856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
MIP_RAT2.430e-2536.51Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE2.430e-2536.51Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQY1_YEAST3.174e-2537.57Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQY2_YEAST4.145e-2537.57Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]
TIP_ANTMA5.413e-2534.93Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP31_MAIZE5.413e-2538.97Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP1_MEDTR9.234e-2535.23Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP6_HUMAN9.234e-2538.10Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIPA_PHAVU1.206e-2435.71Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP31_ORYSJ1.206e-2436.60Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187856 ID=CN187856; Name=CN187856; organism=Citrus sinensis; type=EST; length=775bp
TTTACGCAATGCTNATAATTTACACACAATTAATTAACATCTTAAACAGT
CTATCACCAAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAAT
TAAAAAAAAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAG
GGAATGGCCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCC
AATGAATGGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTT
TGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTT
CCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAAT
GGGGAGGGGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCG
CATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATC
TCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGC
TCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAA
CACCAGCACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACA
GCCCTTGTCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGC
TGGGTTGATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAT
AGATCATGCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAG
CACTTGGTGTTAGACTTAGAGACAC
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