CN187843

Overview
NameCN187843
Unique NameCN187843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  133 SAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENA-KFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVV 639
            +  +TGGASGIG A   A   +   V V D+ E +G+   A++ KEN  + H         F++ D+TN      A    V  +GGLD+ IN+AGI    P HE +      W   L+VNL  +   ++ A+  M  + K G IIN  S  G+  +   P Y+ASKGGV+
Sbjct:    7 TVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGE---AMIRKENNDRLH---------FVQTDITNEPACQNAILSAVDKFGGLDVLINNAGIEIVAPIHEMELS---DWNKVLNVNLTGMFLMSKHALKYMLKSGK-GNIINTCSVGGVVAWPDIPAYNASKGGVL 160          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 58/176 (32.95%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A +TGGASGIG   +      G  V V D+ +E G  + A            LG  ++ ++ CDVTN  D AAA +  VA +G LD+  N+AG+S P  F   +      +   L VNLV     T+ A  +M  A++ G II+  S +          Y+ SK  +V FT +
Sbjct:   17 GKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVA-----------ELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECT-KEDFERVLAVNLVGPFLGTKHAARVMAPARR-GSIISTASLSSSVSGAASHAYTTSKHALVGFTEN 179          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 58/177 (32.77%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            G    +TG  SGIG+  ++  A +G  V + D+SEEKGKE   L++    +         A FI  DV   +D     +K V T+G LDI +N+AGI   +P+   +      +  T+ VN+      ++ A+  M+  +  GVI+N+ S AGL       +YS SK  ++  TRSL
Sbjct:    5 GKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGE---------AAFIFGDV--AKDAEQIVKKTVETFGRLDILVNNAGI---VPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMK-KQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSL 166          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            +TGG++G+GRA+++    +   V +   + E+        E  +AK         A+ ++ DVT   D     +  +  +G LD+ IN+AG+ NP+P HE   D   +W   +D NL      +++AI         G +INM S   + P+     Y+ASKGG+ L T +L
Sbjct:   12 ITGGSTGLGRAMAVRFGQEEAKVVINYYNNEE--------EALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD---NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETL 172          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            +TGG++G+GRA+++    +   V +   + E+        E  +AK         A+ ++ DVT   D     +  +  +G LD+ IN+AG+ NP+P HE   D   +W   +D NL      +++AI         G +INM S   + P+     Y+ASKGG+ L T +L
Sbjct:   12 ITGGSTGLGRAMAVRFGQEEAKVVINYYNNEE--------EALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD---NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETL 172          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  136 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASK 627
            A +TGGA GIG A     A +G  V V DL+ E  +++A        + +   G   AM ++ DVT   D  +AFE+    YGG+DI +N+AG++   PF E      + W   ++V         ++A   M+   + G ++ +GS   +Y       YS+ K
Sbjct:  430 ALITGGAGGIGSAACRRFAAEGGHVIVADLNIEGAQKIAG-------EINDAYGKGRAMAVKMDVTKEEDVQSAFERAALAYGGIDIVVNNAGLATSSPFDE---TSLKEWNLNMNVLGTGYFLVAREAFKQMKHQNRGGSMVFVGSKNSVYAGKNASAYSSVK 583          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: LINX_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linX PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 57/176 (32.39%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A +TGGASG+G A +   A +G  V + DL+EE  K V A +               A+FIR DVT+      A    V  +GGL    N+AGI +P  F E+  +G   W   + VN  A+    + AI  +  +   G IIN+ S  G++P   +  Y A+K  V + +++
Sbjct:    7 GKVALITGGASGLGAAQAKRFAEEGAKVVIGDLNEEMAKGVVAEIRAAGG---------DALFIRLDVTDAASWNNAIAAAVDGFGGLTTLSNTAGIIHPGGFEEESIEG---WNKMVAVNQTAIFLGIKAAIPELVKSGN-GSIINISSLIGMFPTAGNASYCATKAAVRIMSKA 169          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 64/182 (35.16%), Postives = 94/182 (51.65%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEK---GKEVAALVE-KENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPF-HEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            G  A +TG A G GR+ ++ LA +G  V +VD+  +    G  +    E  + AK   NLG   A+ I  DV +     A  ++ V+T G LDI   +AGI++ +PF   D  D T  WR  +D+NL  V    + A+  + A ++ G I+   S+AGL  +     YSA+K GVV   RSL
Sbjct:    6 GQVALITGAARGQGRSHAIKLAEEGADVILVDVPNDVVDIGYPLGTADELDQTAKDVENLG-RKAIVIHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIAS-VPFLSHDIPDNT--WRQMIDINLTGVWHTAKVAVPHILAGERGGSIVLTSSAAGLKGYAQISHYSAAKHGVVGLMRSL 183          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHR11_HUMAN (Dehydrogenase/reductase SDR family member 11 OS=Homo sapiens GN=DHRS11 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 1
Query:  136 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMF-IRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAK-KPGVIINMGSSAG--LYPFYTDPIYSASKGGVVLFTRSL 657
            A VTG + GIG A++ AL  +G+ V     +    +E+AA  +        + G+P  +   RCD++N  D  + F    + + G+DICIN+AG++ P       T G   W+   +VN++A+  CT++A   M+      G IIN+ S +G  + P      YSA+K  V   T  L
Sbjct:   14 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK--------SAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSG---WKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGL 180          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 56/179 (31.28%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  136 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIP---FHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAK-----KPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFT 648
            + VTGGASG+GRA +  LA +G  V + DL   KG EVA             LG    +F+  DVT+ +D +AA +     +G LD+ +N AG +  +    F+++       ++  +++N V   +  + + G+M A +     + GVI+N  S A          YSASK  VV  T
Sbjct:    7 SLVTGGASGLGRATAERLAKQGASVILADLPSSKGNEVA-----------KELG-DKVVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIVNTASVAAFDGQIGQAAYSASKAAVVGMT 173          
The following BLAST results are available for this feature:
BLAST of CN187843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
BACC_BACAM1.063e-1535.29Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
MOMAS_ORYSJ5.276e-1532.95Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
Y325_THEMA6.890e-1532.77Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
DHGA_BACME2.005e-1429.65Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
DHG4_BACME2.005e-1429.65Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
YUXG_BACSU4.466e-1429.88Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
LINX_PSEPA4.466e-1432.392,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
LIMC_RHOER7.618e-1435.16(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
DHR11_HUMAN7.618e-1431.46Dehydrogenase/reductase SDR family member 11 OS=Ho... [more]
HCD2_DROME9.949e-1431.283-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005B12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187843 ID=CN187843; Name=CN187843; organism=Citrus sinensis; type=EST; length=677bp
AGGTGTTCAAATAAATACCCGGGAAAAGGGGCAGTTAAAGCCCGATCACA
TAAGAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGCCTCTCTGT
TTGTTCATAAAATGGAGCTCAAACCGGGCTTATCAGCTTTTGTCACCGGC
GGTGCATCTGGGATTGGTAGAGCTTTGAGCCTAGCTCTTGCAGGGAAGGG
AGTCTTTGTGACAGTTGTTGATCTCTCTGAAGAAAAGGGAAAGGAAGTTG
CAGCGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTT
CCATCTGCTATGTTTATAAGATGTGATGTGACCAACACAAGGGATACAGC
TGCTGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTA
TCAACAGTGCTGGCATAAGTAATCCCATTCCATTCCACGAGGATCAAACT
GATGGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGGTTGCAGT
TATTGATTGCACTCAGAAAGCGATTGGAATTATGCAAGCTGCAAAAAAGC
CTGGAGTGATTATAAATATGGGATCTTCTGCAGGACTTTATCCATTTTAC
ACAGATCCAATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAG
ATCACTTACTCCCTACAAAAGCAAGGG
back to top