CN187843

Overview
NameCN187843
Unique NameCN187843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            +TGG++G+GRA+++    +   V +   + E+        E  +AK         A+ ++ DVT   D     +  +  +G LD+ IN+AG+ NP+P HE   D   +W   +D NL      +++AI         G +INM S   + P+     Y+ASKGG+   T +L
Sbjct:   12 ITGGSTGLGRAMAVRFGQEEAKVVINYYNNEE--------EALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD---NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETL 172          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHR11_BOVIN (Dehydrogenase/reductase SDR family member 11 OS=Bos taurus GN=DHRS11 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 57/178 (32.02%), Postives = 89/178 (50.00%), Query Frame = 1
Query:  136 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMF-IRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAK-KPGVIINMGSSAG--LYPFYTDPIYSASKGGVVLFTRSL 657
            A VTG + GIG A++ AL  +G+ V     +    +E+AA  +        + G+P  +   RCD++N  D  + F    + + G+DICIN+AG++ P       T G   W+   +VN++A+  CT++A   M+  K   G IIN+ S  G  + P      YSA+K  V   T  L
Sbjct:    9 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK--------SAGYPGTLIPYRCDLSNEEDILSMFSAVRSQHSGVDICINNAGLARPDTLLSGSTSG---WKEMFNVNVLALSICTREACQSMRERKVDDGHIININSMCGHRVPPPAETHFYSATKYAVTALTEGL 175          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 56/171 (32.75%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            VTGGA G+G      LA +G  V + D++EE G +  A + ++  K H         F+  DVTN      A +  +A    LD  +N+AGI    P    Q      W    ++N+ +V   T+  I  M+ A K G I+N+ S  GL        Y ASKG V LFT++
Sbjct:   11 VTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGGKAH---------FLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPV---QDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHK-GCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKA 168          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 56/171 (32.75%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            VTGGA G+G      LA +G  V + D++EE G +  A + ++  K H         F+  DVTN      A +  +A    LD  +N+AGI    P    Q      W    ++N+ +V   T+  I  M+ A K G I+N+ S  GL        Y ASKG V LFT++
Sbjct:   11 VTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGGKAH---------FLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPV---QDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHK-GCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKA 168          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: HCD2_HUMAN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 61/191 (31.94%), Postives = 84/191 (43.98%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGI---SNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM-----QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFT----RSLTP 663
            GL A +TGGASG+G A +  L G+G    ++DL    G       E +  K  +N      +F   DVT+ +D   A       +G +D+ +N AGI   S      + QT     ++  LDVNL+   +  +   G M         + GVIIN  S A          YSASKGG+V  T    R L P
Sbjct:   10 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG-------EAQAKKLGNN-----CVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAP 188          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 55/177 (31.07%), Postives = 79/177 (44.63%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            G  A VTGG  GIG A++   A  G+ V + ++ EE G      VE+E       L      F++ DV +         K V  YGG+D+ +N+A + +     E   +    W   + VNL     C++     M   +  GVIIN+ S+           YSASKGG+V  T SL
Sbjct:    4 GKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAG------VEREEMLRERGL---DVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVKSIFERPLE---EWERVIRVNLTGPYICSRYCAEEM-IKRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSL 167          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 58/191 (30.37%), Postives = 89/191 (46.60%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPI-PFHE--DQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM-----QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFT----RSLTP 663
            GL A +TGGASG+G + +  L G+G    ++D+   +G       E E  K   N      +F   +VT+ ++  AA       +G +D+ +N AGI+  I  +HE  +Q      ++  ++VNL+   +  +   G+M         + GVIIN  S A          YSASKGG+V  T    R L P
Sbjct:   10 GLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEG-------ETEAKKLGGN-----CIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAP 188          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: HCD2_BOVIN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taurus GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 59/191 (30.89%), Postives = 83/191 (43.46%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGI---SNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM-----QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFT----RSLTP 663
            GL A +TGGASG+G A +  L G+G    ++DL    G+  A  + K            S  F   DVT+ +D  AA       +G +D+ +N AGI   S      + Q      ++  ++VNL+   +  +   G M         + GVIIN  S A          YSASKGG+V  T    R L P
Sbjct:   10 GLVALITGGASGLGLATAERLVGQGATAVLLDLPNSDGETQAKKLGK------------SCAFAPADVTSEKDVQAALTLAREKFGRVDVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAP 188          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 58/172 (33.72%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            VTG + GIG+A++L+L   G  V V   +  +  + A  V KE   F        A+    DV+   D  A  +  V  +G +DI +N+AGI+        +      W+  +D+NL  V  CTQ A  IM   KK G IIN+ S  GL        YSA+K GV+ FT+++
Sbjct:   82 VTGASRGIGKAIALSLGKAGCKVLV---NYARSSKEAEEVSKEIEAFGGQ-----ALTFGGDVSKEEDVEAMIKTAVDAWGTVDILVNNAGITRDGLLMRMKKS---QWQEVIDLNLTGVFLCTQAAAKIMMKKKK-GRIINIASVVGLVGNAGQANYSAAKAGVIGFTKTV 241          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHR11_MOUSE (Dehydrogenase/reductase SDR family member 11 OS=Mus musculus GN=Dhrs11 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  136 AFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMF-IRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAK-KPGVIINMGSSAG--LYPFYTDPIYSASKGGVVLFTRSL 657
            A VTG + GIG A++ AL  +G+ V     +    +E+AA  +        + G+P  +   RCD++N  D  + F    + + G+DICIN+AG++ P       T G   W+   +VN++A+  CT++A   M+      G IIN+ S  G  + P      YSA+K  V   T  L
Sbjct:   14 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK--------SAGYPGTLIPYRCDLSNEEDILSMFSAVRSQHSGVDICINNAGMARPDTLLSGSTSG---WKDMFNVNVLALSICTREAYQSMKERNIDDGHIININSMCGHRVPPQSVIHFYSATKYAVTALTEGL 180          
The following BLAST results are available for this feature:
BLAST of CN187843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
DHG3_BACME9.949e-1429.07Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
DHR11_BOVIN1.697e-1332.02Dehydrogenase/reductase SDR family member 11 OS=Bo... [more]
CPNA_COMTE2.895e-1332.75Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS92.895e-1332.75Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
HCD2_HUMAN3.781e-1331.943-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sap... [more]
Y019_THEMA6.449e-1331.07Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
HCD2_RAT6.449e-1330.373-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
HCD2_BOVIN6.449e-1330.893-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taur... [more]
FABG_CUPLA6.449e-1333.723-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHR11_MOUSE8.423e-1331.46Dehydrogenase/reductase SDR family member 11 OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187843 ID=CN187843; Name=CN187843; organism=Citrus sinensis; type=EST; length=677bp
AGGTGTTCAAATAAATACCCGGGAAAAGGGGCAGTTAAAGCCCGATCACA
TAAGAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGCCTCTCTGT
TTGTTCATAAAATGGAGCTCAAACCGGGCTTATCAGCTTTTGTCACCGGC
GGTGCATCTGGGATTGGTAGAGCTTTGAGCCTAGCTCTTGCAGGGAAGGG
AGTCTTTGTGACAGTTGTTGATCTCTCTGAAGAAAAGGGAAAGGAAGTTG
CAGCGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTT
CCATCTGCTATGTTTATAAGATGTGATGTGACCAACACAAGGGATACAGC
TGCTGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTA
TCAACAGTGCTGGCATAAGTAATCCCATTCCATTCCACGAGGATCAAACT
GATGGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGGTTGCAGT
TATTGATTGCACTCAGAAAGCGATTGGAATTATGCAAGCTGCAAAAAAGC
CTGGAGTGATTATAAATATGGGATCTTCTGCAGGACTTTATCCATTTTAC
ACAGATCCAATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAG
ATCACTTACTCCCTACAAAAGCAAGGG
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