CK938716
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 98 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331 +R +VG + W D+ L + F +G ++ ++++ DRE+GRS GFGFVT E AI ++GQ LDGRTI VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 101 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331 R +VG L+W D +L F G ++E+++I DR++GRS GFGFVT + + AI +NG +LDGR I V+EA+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + FVGGL++ T + +L + F YG I E ++ DRET RS GFGFVTF + + A+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + FVGGL++ T + L F YG I E ++ DRET RS GFGFVTF + + + A+ GMNG+ +DGR I V++A Sbjct: 5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + FVGGL++ T + +L + F YG I E ++ DRET RS GFGFVTF + + A+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + FVGGL++ T + +L + F YG I E ++ DRET RS GFGFVTF + + A+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14 Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + F+GGL + T + SL + F YG I E ++ DRET RS GFGFVTF + + A+ MNG+ +DGR I V++A Sbjct: 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 1.015e-13 Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + F+GGL + T + L +AF YG I E ++ DRET RS GFGFVTF + + A+ MNG+++DGR I V++A Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + FVGGL + T + +L + F ++G I E ++ DRET RS GFGF+TF + + A++ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328 E + FVGGL + T + +L + F ++G I E ++ DRET RS GFGF+TF + + A++ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82 The following BLAST results are available for this feature:
BLAST of CK938716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938716 ID=CK938716; Name=CK938716; organism=Citrus sinensis; type=EST; length=430bpback to top |