CK938716

Overview
NameCK938716
Unique NameCK938716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938716_ssr414 microsatellite CK938716_ssr414:414..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:1..430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            +R +VG + W   D+ L + F  +G ++ ++++ DRE+GRS GFGFVT   E     AI  ++GQ LDGRTI VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            R +VG L+W   D +L   F   G ++E+++I DR++GRS GFGFVT    +  + AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RS GFGFVTF +    + A+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + FVGGL++ T +  L   F  YG I E  ++ DRET RS GFGFVTF + +  + A+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RS GFGFVTF +    + A+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RS GFGFVTF +    + A+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + F+GGL + T + SL + F  YG I E  ++ DRET RS GFGFVTF +    + A+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.015e-13
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + F+GGL + T +  L +AF  YG I E  ++ DRET RS GFGFVTF +    + A+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + FVGGL + T + +L + F ++G I E  ++ DRET RS GFGF+TF + +    A++ MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEA 328
            E + FVGGL + T + +L + F ++G I E  ++ DRET RS GFGF+TF + +    A++ MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
The following BLAST results are available for this feature:
BLAST of CK938716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ROC3_NICSY2.045e-1443.5928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_ARATH3.489e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_RAT3.489e-1446.15Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA3.489e-1447.44Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE3.489e-1446.15Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR3.489e-1446.15Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA5.951e-1446.15Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA1.015e-1346.15Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
RBM3_MOUSE1.731e-1344.87Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RBM3_HUMAN2.953e-1344.87Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_B09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938716 ID=CK938716; Name=CK938716; organism=Citrus sinensis; type=EST; length=430bp
GGGGATTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTCT
TAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTTT
AGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAACG
ATCGCGAGACTGGAAGATCCACAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGACAAGGGGCGCGATCAAAGGCATGAACGGTCAGAATCTCGA
CGGCCGTACCATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCG
GTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGTGGTGGA
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