CK938702

Overview
NameCK938702
Unique NameCK938702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:1..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-24
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-24
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_LAPHA (60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.333e-24
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_RAT (60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV  FAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    P+ + R+G+ +K   F R +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKG+ VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.211e-23
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN---ALRKSRA 359
            VGL KGH VTK    P+ + R G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN   A+RK+ A
Sbjct:    9 VGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNILAAMRKAAA 102          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   54 MAPKQP-NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            MA + P  TGL VGLNKGH  T + + PR +  KG  SKR  FVR V++EVAG APYE+R+ ELL+  KDKRA K+AK++LGT  RAK+K +E+   + +SR
Sbjct:    1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102          
BLAST of CK938702 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 3
Query:   78 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            GL VGLNKGH  T+  +  R    KG  SK+   VR ++RE+ GFAPYE+R+ E+L++ KDKRALK  KR++GTH+RAK KREE+ N +   R
Sbjct:    8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100          
The following BLAST results are available for this feature:
BLAST of CK938702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_PONAB1.954e-2462.2260S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_HUMAN1.954e-2462.2260S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
RL36_LAPHA2.552e-2462.2260S ribosomal protein L36 OS=Lapemis hardwickii GN... [more]
RL36_BOVIN3.333e-2462.2260S ribosomal protein L36 OS=Bos taurus GN=RPL36 P... [more]
RL36_RAT9.699e-2461.1160S ribosomal protein L36 OS=Rattus norvegicus GN=... [more]
RL36_DANRE1.267e-2360.0060S ribosomal protein L36 OS=Danio rerio GN=rpl36 ... [more]
RL36_CHICK1.267e-2361.1160S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]
RL36_ICTPU8.211e-2359.5760S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_TRIHM1.829e-2253.9260S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_CAEEL2.389e-2252.6960S ribosomal protein L36 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_E03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938702 ID=CK938702; Name=CK938702; organism=Citrus sinensis; type=EST; length=645bp
GGGGACTCCAACTCATCTTAAGTTTCCGCAGCAACTCAGTTTCGTCGGAG
GTGATGGCTCCGAAACAGCCAAATACTGGTCTCTTTGTTGGATTAAACAA
GGGTCATATTGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCA
AAGGGAAAACAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAA
GTTGCTGGCTTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGT
CGGCAAGGACAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACTC
ACAAGAGGGCAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAG
AGTAGGGCCCCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCT
AGATGTCTTGTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGTTTT
AGCCTATGTTGTTTGCCTTTTTTTCCCCTTCATTTCAAAAACTGAGTTAA
AGATGTCAATTTGAGTGCTACAATGACCTTTACCTTTTTCCAGAGAAAAA
TTTAATTGTTTTTTGTTTGTTGATGTTTTTGTAGCCAATTGCTATTTGGC
TACAACGCAATCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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